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Table 1 Overview of data files/data sets

From: Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction

Label Name of data file/data set File types (file extension) Data repository and identifier (DOI or accession number)
Supplementary file 1 Methodology description Word document (.dox) https://doi.org/10.6084/m9.figshare.7980176
Figure S1 A flow chart representing experimental methods Image file (.tiff) https://doi.org/10.6084/m9.figshare.7980176
Figure S2 A flow chart showing the RNA-seq data analysis pipeline Image file (.tiff) https://doi.org/10.6084/m9.figshare.7980176
Figure S3 The hierarchical clustering of top 3000 variable genes Image file (.tiff) https://doi.org/10.6084/m9.figshare.7980176
Figure S4 The correlation between the samples using the top 75% genes Image file (.tiff) https://doi.org/10.6084/m9.figshare.7980176
Figure S5 Quality metrics of G. max sequencing data. (a) Mean quality scores per position. (b) Per sequence quality scores. (c) GC content distribution. (d) Read length distribution Image file (.tiff) https://doi.org/10.6084/m9.figshare.7980176
Data file 1 Control: No aphids; Susceptible soybean; Day 1; SRR8848027 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848027
Data file 2 Control: No aphids; Susceptible soybean; Day 11; SRR8848028 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848028
Data file 3 Control: No aphids; Resistant soybean; Day 1; SRR8848025 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848025
Data file 4 Control: No aphids; Resistant soybean; Day 11; SRR8848026 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848026
Data file 5 Inducer: None; Response: 15 biotype 1; Susceptible soybean; Day 11; SRR8848031 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848031
Data file 6 Inducer: 50 biotype 2; Response:15 biotype 1; Susceptible soybean; Day 1;SRR8848032 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848032
Data file 7 Inducer: 50 biotype 2; Response: 15 biotype1; Susceptible soybean; Day 11; SRR8848029 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848029
Data file 8 Inducer: None; Response: 15 biotype 1; Resistant soybean; Day 11; SRR8848030 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848030
Data file 9 Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 1; SRR8848023 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848023
Data file 10 Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 11; SRR8848024 fastq file (.fastq) https://identifiers.org/ncbi/insdc.sra:SRR8848024
Data file 11 Control: No aphids; Susceptible soybean; Day 1; GSM3717543 txt (.txt.gz) http://identifiers.org/geo:GSM3717543
Data file 12 Control: No aphids; Susceptible soybean; Day 11; GSM3717544 txt (.txt.gz) http://identifiers.org/geo:GSM3717544
Data file 13 Control: No aphids; Resistant soybean; Day 1; GSM3717545 txt (.txt.gz) http://identifiers.org/geo:GSM3717545
Data file 14 Control: No aphids; Resistant soybean; Day 11; GSM3717546 txt (.txt.gz) http://identifiers.org/geo:GSM3717546
Data file 15 Inducer: None; Response: 15 biotype 1; Susceptible soybean; Day 11; GSM3717547 txt (.txt.gz) http://identifiers.org/geo:GSM3717547
Data file 16 Inducer: 50 biotype 2; Response: 15 biotype 1; Susceptible soybean; Day 1; GSM3717548 txt (.txt.gz) http://identifiers.org/geo:GSM3717548
Data file 17 Inducer: 50 biotype 2; Response: 15 biotype1; Susceptible soybean; Day 11; GSM3717549 txt (.txt.gz) http://identifiers.org/geo:GSM3717549
Data file 18 Inducer: None; Response: 15 biotype 1; Resistant soybean; Day 11; GSM3717550 txt (.txt.gz) http://identifiers.org/geo:GSM3717550
Data file 19 Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 1; GSM3717551 txt (.txt.gz) http://identifiers.org/geo:GSM3717551
Data file 20 Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 11; GSM3717552 txt (.txt.gz) http://identifiers.org/geo:GSM3717552
Data file 21 The transformed transcript abundance counts for all the samples Spreadsheet (.xlsx) https://doi.org/10.6084/m9.figshare.7980176
Data file 22 The hierarchical clustering of top 3000 variable genes Spreadsheet (.xlsx) https://doi.org/10.6084/m9.figshare.7980176
Table S1 Statistics of the transcriptomic data using RNA-seq pipeline used in this study Word document (.dox) https://doi.org/10.6084/m9.figshare.7980176
  1. The supplementary materials (Supplementary file 1, Figure S1–S5, Data file 21, Data file 22, and Table S1) can be assessed openly on Figshare [19]. The raw RNA-seq data (.fastq files) are available for download on the SRA [20] and the raw transcript abundance counts (.txt.gz) are available on Gene Expression Omnibus (GEO) [21]
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BMC Research Notes

ISSN: 1756-0500

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