Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Supplementary file 1 | Methodology description | Word document (.dox) | |
Figure S1 | A flow chart representing experimental methods | Image file (.tiff) | |
Figure S2 | A flow chart showing the RNA-seq data analysis pipeline | Image file (.tiff) | |
Figure S3 | The hierarchical clustering of top 3000 variable genes | Image file (.tiff) | |
Figure S4 | The correlation between the samples using the top 75% genes | Image file (.tiff) | |
Figure S5 | Quality metrics of G. max sequencing data. (a) Mean quality scores per position. (b) Per sequence quality scores. (c) GC content distribution. (d) Read length distribution | Image file (.tiff) | |
Data file 1 | Control: No aphids; Susceptible soybean; Day 1; SRR8848027 | fastq file (.fastq) | |
Data file 2 | Control: No aphids; Susceptible soybean; Day 11; SRR8848028 | fastq file (.fastq) | |
Data file 3 | Control: No aphids; Resistant soybean; Day 1; SRR8848025 | fastq file (.fastq) | |
Data file 4 | Control: No aphids; Resistant soybean; Day 11; SRR8848026 | fastq file (.fastq) | |
Data file 5 | Inducer: None; Response: 15 biotype 1; Susceptible soybean; Day 11; SRR8848031 | fastq file (.fastq) | |
Data file 6 | Inducer: 50 biotype 2; Response:15 biotype 1; Susceptible soybean; Day 1;SRR8848032 | fastq file (.fastq) | |
Data file 7 | Inducer: 50 biotype 2; Response: 15 biotype1; Susceptible soybean; Day 11; SRR8848029 | fastq file (.fastq) | |
Data file 8 | Inducer: None; Response: 15 biotype 1; Resistant soybean; Day 11; SRR8848030 | fastq file (.fastq) | |
Data file 9 | Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 1; SRR8848023 | fastq file (.fastq) | |
Data file 10 | Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 11; SRR8848024 | fastq file (.fastq) | |
Data file 11 | Control: No aphids; Susceptible soybean; Day 1; GSM3717543 | txt (.txt.gz) | |
Data file 12 | Control: No aphids; Susceptible soybean; Day 11; GSM3717544 | txt (.txt.gz) | |
Data file 13 | Control: No aphids; Resistant soybean; Day 1; GSM3717545 | txt (.txt.gz) | |
Data file 14 | Control: No aphids; Resistant soybean; Day 11; GSM3717546 | txt (.txt.gz) | |
Data file 15 | Inducer: None; Response: 15 biotype 1; Susceptible soybean; Day 11; GSM3717547 | txt (.txt.gz) | |
Data file 16 | Inducer: 50 biotype 2; Response: 15 biotype 1; Susceptible soybean; Day 1; GSM3717548 | txt (.txt.gz) | |
Data file 17 | Inducer: 50 biotype 2; Response: 15 biotype1; Susceptible soybean; Day 11; GSM3717549 | txt (.txt.gz) | |
Data file 18 | Inducer: None; Response: 15 biotype 1; Resistant soybean; Day 11; GSM3717550 | txt (.txt.gz) | |
Data file 19 | Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 1; GSM3717551 | txt (.txt.gz) | |
Data file 20 | Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 11; GSM3717552 | txt (.txt.gz) | |
Data file 21 | The transformed transcript abundance counts for all the samples | Spreadsheet (.xlsx) | |
Data file 22 | The hierarchical clustering of top 3000 variable genes | Spreadsheet (.xlsx) | |
Table S1 | Statistics of the transcriptomic data using RNA-seq pipeline used in this study | Word document (.dox) |