Supplementary file 1
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Methodology description
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Word document (.dox)
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https://doi.org/10.6084/m9.figshare.7980176
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Figure S1
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A flow chart representing experimental methods
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Image file (.tiff)
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https://doi.org/10.6084/m9.figshare.7980176
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Figure S2
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A flow chart showing the RNA-seq data analysis pipeline
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Image file (.tiff)
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https://doi.org/10.6084/m9.figshare.7980176
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Figure S3
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The hierarchical clustering of top 3000 variable genes
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Image file (.tiff)
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https://doi.org/10.6084/m9.figshare.7980176
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Figure S4
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The correlation between the samples using the top 75% genes
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Image file (.tiff)
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https://doi.org/10.6084/m9.figshare.7980176
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Figure S5
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Quality metrics of G. max sequencing data. (a) Mean quality scores per position. (b) Per sequence quality scores. (c) GC content distribution. (d) Read length distribution
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Image file (.tiff)
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https://doi.org/10.6084/m9.figshare.7980176
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Data file 1
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Control: No aphids; Susceptible soybean; Day 1; SRR8848027
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848027
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Data file 2
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Control: No aphids; Susceptible soybean; Day 11; SRR8848028
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848028
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Data file 3
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Control: No aphids; Resistant soybean; Day 1; SRR8848025
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848025
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Data file 4
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Control: No aphids; Resistant soybean; Day 11; SRR8848026
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848026
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Data file 5
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Inducer: None; Response: 15 biotype 1; Susceptible soybean; Day 11; SRR8848031
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848031
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Data file 6
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Inducer: 50 biotype 2; Response:15 biotype 1; Susceptible soybean; Day 1;SRR8848032
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848032
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Data file 7
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Inducer: 50 biotype 2; Response: 15 biotype1; Susceptible soybean; Day 11; SRR8848029
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848029
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Data file 8
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Inducer: None; Response: 15 biotype 1; Resistant soybean; Day 11; SRR8848030
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848030
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Data file 9
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Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 1; SRR8848023
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848023
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Data file 10
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Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 11; SRR8848024
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fastq file (.fastq)
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https://identifiers.org/ncbi/insdc.sra:SRR8848024
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Data file 11
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Control: No aphids; Susceptible soybean; Day 1; GSM3717543
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717543
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Data file 12
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Control: No aphids; Susceptible soybean; Day 11; GSM3717544
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717544
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Data file 13
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Control: No aphids; Resistant soybean; Day 1; GSM3717545
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717545
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Data file 14
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Control: No aphids; Resistant soybean; Day 11; GSM3717546
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717546
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Data file 15
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Inducer: None; Response: 15 biotype 1; Susceptible soybean; Day 11; GSM3717547
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717547
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Data file 16
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Inducer: 50 biotype 2; Response: 15 biotype 1; Susceptible soybean; Day 1; GSM3717548
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717548
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Data file 17
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Inducer: 50 biotype 2; Response: 15 biotype1; Susceptible soybean; Day 11; GSM3717549
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717549
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Data file 18
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Inducer: None; Response: 15 biotype 1; Resistant soybean; Day 11; GSM3717550
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717550
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Data file 19
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Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 1; GSM3717551
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717551
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Data file 20
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Inducer: 50 biotype 2; Response: 15 biotype 1; Resistant soybean; Day 11; GSM3717552
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txt (.txt.gz)
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http://identifiers.org/geo:GSM3717552
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Data file 21
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The transformed transcript abundance counts for all the samples
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Spreadsheet (.xlsx)
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https://doi.org/10.6084/m9.figshare.7980176
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Data file 22
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The hierarchical clustering of top 3000 variable genes
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Spreadsheet (.xlsx)
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https://doi.org/10.6084/m9.figshare.7980176
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Table S1
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Statistics of the transcriptomic data using RNA-seq pipeline used in this study
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Word document (.dox)
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https://doi.org/10.6084/m9.figshare.7980176
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