A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill

Gillman, Jason D.; Biever, Jessica J.; Ye, Songqing; Spollen, William G.; Givan, Scott A.; Lyu, Zhen; Joshi, Trupti; Smith, James R.; Fritschi, Felix B.

doi:10.1186/s13104-019-4559-7

Table 1 RNAseq sample details

From: A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill

NCBI SRA accession#	PI#	Stress condition	Seed tissue	Bio rep	Illumina index	Barcode	Mapped reads (Mil)	For QS	Rev QS
SAMN10588589	PI587982A	CSPS	Mature	1	4	TGACCA	833.2	38.2	37.6
SAMN10588590	PI587982A	CSPS	Mature	2	16	CCGTCC	446.9	38.2	37.4
SAMN10588591	PI587982A	CSPS	Mature	3	14	AGTTCC	444.3	38.2	37.3
SAMN10588592	S99-11986	CSPS	Mature	1	19	GTGAAA	294.4	38.1	36.9
SAMN10588593	S99-11986	CSPS	Mature	2	13	AGTCAA	346.8	38	36
SAMN10588594	S99-11986	CSPS	Mature	3	15	ATGTCA	334.2	38.1	36.9
SAMN10588595	PI587982A	CSPS	Imbibed	1	14	AGTTCC	362.4	38.1	36.8
SAMN10588596	PI587982A	CSPS	Imbibed	2	4	TGACCA	329.5	38.1	37
SAMN10588597	PI587982A	CSPS	Imbibed	3	16	CCGTCC	311.4	38.5	37.4
SAMN10588598	S99-11986	CSPS	Imbibed	1	5	ACAGTG	307.4	38.6	37.3
SAMN10588599	S99-11986	CSPS	Imbibed	2	7	CAGATC	269.1	38.5	37.1
SAMN10588600	S99-11986	CSPS	Imbibed	3	18	GTCCGC	305.3	38.5	37.4
SAMN10588601	PI587982A	CSPS	Germinated	1	7	CAGATC	910.2	38	36.7
SAMN10588602	PI587982A	CSPS	Germinated	2	18	GTCCGC	316.7	38	36.8
SAMN10588603	PI587982A	CSPS	Germinated	3	5	ACAGTG	448.8	38.1	36.8
SAMN10588604	S99-11986	CSPS	Germinated	1	18	GTCCGC	377.2	38.1	37.3
SAMN10588605	S99-11986	CSPS	Germinated	2	5	ACAGTG	387.2	38.2	37.4
SAMN10588606	S99-11986	CSPS	Germinated	3	7	CAGATC	401.5	38.1	37
SAMN10588607	PI587982A	ESPS	Mature	1	6	GCCAAT	375.4	38.2	37.3
SAMN10588608	PI587982A	ESPS	Mature	2	2	CGATGT	481.8	38.2	37.4
SAMN10588609	PI587982A	ESPS	Mature	3	12	CTTGTA	469.1	38	36.4
SAMN10588610	S99-11986	ESPS	Mature	1	15	ATGTCA	388.3	38.2	37.2
SAMN10588611	S99-11986	ESPS	Mature	2	19	GTGAAA	396.9	38.2	37.3
SAMN10588612	S99-11986	ESPS	Mature	3	13	AGTCAA	429.2	38.2	37.4
SAMN10588613	PI587982A	ESPS	Imbibed	1	12	CTTGTA	229.7	38.5	37.4
SAMN10588614	PI587982A	ESPS	Imbibed	2	6	GCCAAT	332.0	38.6	37.5
SAMN10588615	PI587982A	ESPS	Imbibed	3	2	CGATGT	306.9	38.6	37.5
SAMN10588616	S99-11986	ESPS	Imbibed	1	16	CCGTCC	380.1	38	36.4
SAMN10588617	S99-11986	ESPS	Imbibed	2	14	AGTTCC	287.2	38.6	37.5
SAMN10588618	S99-11986	ESPS	Imbibed	3	4	TGACCA	297.2	38.6	37.3
SAMN10588619	PI587982A	ESPS	Germinated	1	13	AGTCAA	229.0	38.6	37.5
SAMN10588620	PI587982A	ESPS	Germinated	2	15	ATGTCA	314.3	38.6	37.6
SAMN10588621	PI587982A	ESPS	Germinated	3	19	GTGAAA	260.3	38.6	37.6
SAMN10588622	S99-11986	ESPS	Germinated	1	2	CGATGT	499.9	38.1	37
SAMN10588623	S99-11986	ESPS	Germinated	2	12	CTTGTA	290.2	38.2	36.9

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ISSN: 1756-0500

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