Gene/SNP | Chr. | Alleles (minor/major) | Variant type | Previously reported results (Kiani et al. [23]) | Our replication results | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
MAF | p-value | FDR | MAF cases | MAF controls | OR | p-value | FDR | ||||
GLIS3/rs7020673 | 9p24.2 | C/G | Intron | 0.414664 | 2.86E−04 | 3.59E−03 | 0.47691 | 0.486506 | 0.9 | 7.99E−02 | 2.93E−01 |
C6orf173/rs9388489 | 6q22.32 | A/G | Intron | 0.371429 | 3.11E−03 | 1.92E−02 | 0.370573 | 0.350714 | 1.1 | 1.00E−01 | 2.93E−01 |
SKAP2/rs7804356 | 7p15.2 | C/T | Intron | 0.195271 | 2.47E−04 | 3.59E−03 | 0.210042 | 0.218705 | 0.9 | 1.25E−01 | 2.93E−01 |
MEG3/rs941576 | 14q32.2 | G/A | Intron | 0.27612 | 9.51E−03 | 4.21E−02 | 0.323276 | 0.306525 | 1.1 | 2.38E−01 | 4.16E−01 |
GDSMB/rs2290400 | 17q12 | C/T | Intron | 0.434973 | 3.48E−04 | 3.59E−03 | 0.449324 | 0.482143 | 0.9 | 3.42E−01 | 4.78E−01 |
LOC399716/rs947474 | 10q15.1 | G/A | Upstream | 0.158732 | 4.53E−03 | 2.34E−02 | 0.199242 | 0.17617 | 1.1 | 4.96E−01 | 5.79E−01 |
BACH2/rs11755527 | 6q15 | G/C | Intron | 0.404286 | 9.16E−04 | 7.09E−03 | 0.435294 | 0.421186 | 1 | 6.66E−01 | 6.66E−01 |