Table 1 Pyrenophora tritici-repentis race 1 isolate genome information and assembly statistics
From: A new PacBio genome sequence of an Australian Pyrenophora tritici-repentis race 1 isolate
V1 | M4a | Pt-1C-BFPa | |
|---|---|---|---|
Isolate information | |||
Sequencing Platform | PacBio Sequel | PacBio RSII | Sanger, Illumina |
Genome accession | SAXQ00000000 | NQIK00000000 | AAXI00000000 |
Collection site | Victoria, Australia | Western Australia, Australia | South Dakota, USA |
Collection year | 2015 | 2009 | 1994 |
Contig assembly statistics | |||
Total length (Mb) | 40.4 | 40.9 | 38.0 |
Number | 33 | 51 | 48 |
N50 (Mb) | 3.4 | 2.9 | 1.9 |
Mean (Kb) | 1224 | 802 | 778 |
Max (Mb) | 9.6 | 5.6 | 6.7 |
GC % | 50.4 | 50.7 | 50.8 |
Gene predictions | |||
Number | 14,050 | 13,797 | 12,171 |
%bBUSCO gene | 96.55 | 98.62 | 98.62 |