Skip to main content

Table 1 Overview of data files/data sets

From: A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts

LabelName of data file/data setFile types (file extension)Data repository and identifier (DOI or accession number)
Data file 1Figure 1—Experimental designpngFigshare ( [16]
Data file 2Figure 2—Sponge RNA extraction on gel agarosepngFigshare (
Data file 3Figure 3—Bioinformatic pipelinepngFigshare (
Data file 4Scythe_batchshFigshare (
Data file 5PE_sickle_prinseq_trimmomatic_batchshFigshare (
Data file 6allreads_trinity.fastaFigshare (
Data file 7getit_bacteria.plFigshare (
Data file 8assembly_nobacteria_pass1.fastaFigshare (
Data file 9assembly_nobacteria_final.fastaFigshare (
Data file 10Extract_reads_from_bam.shFigshare (
Data set 1All raw reads from the 20 libraries.fastq.gzSRA (SRP150632) [17]