BMC Research Notes

Table 1 Resampling selection probability for the 108 elasticnet-selected genes

From: Predicting breast cancer metastasis from whole-blood transcriptomic measurements

GRK5^a	0.853	C1orf115	0.290	ANO8	0.221	FBLN5	0.157
GPATCH4	0.682	LOC654055	0.287	PTTG1IP	0.219	BLMH	0.156
GNGT2	0.474	RNF214	0.280	3NDg8gVCd^b	0.218	FCRL3	0.149
PDGFD^c	0.467	SULT1A1	0.278	USF1	0.216	TDRD9	0.143
FAM24B	0.457	ZNF365	0.271	BCCIP	0.210	ACY1	0.142
PTPRN2	0.442	USE1	0.267	MGC29506	0.209	ZFP57	0.142
CBLB	0.440	DNMT3A	0.267	GRK5^a	0.207	SLIC1	0.138
PDCL	0.410	LOC649210	0.266	WTIP	0.205	PICK1	0.135
RASA2	0.380	CNTNAP2	0.265	BCL10	0.204	RTN4IP1	0.134
C11orf48	0.376	IL2RA	0.265	DLGAP2	0.200	CDCA7L	0.132
TCEB1	0.374	CCT5	0.264	HRAS	0.199	BEX4	0.131
CAPN3	0.354	R3HDM1	0.263	RAD1	0.189	FCAR	0.130
STK19	0.351	MRPL43	0.260	PRKCE	0.187	ANKRD35	0.111
GUCY1A3	0.348	SLC38A1	0.256	UBAP2L	0.186	USP39	0.109
ZDHHC11	0.345	GNG8	0.255	BPI	0.186	KIAA0495	0.106
SULT1A3	0.336	PLA2G4C	0.251	DTX1	0.184	BRI3BP	0.106
Z6FIQGkeo^d	0.335	TCF4	0.248	LASS5	0.182	TUBA4A	0.105
FAM89A	0.328	uX15cu4f_^e	0.247	GSTT1	0.182	IDH1	0.102
rh13dQX04^f	0.324	C20orf107	0.245	SPATA20	0.182	DDX52	0.100
LANCL2	0.323	VCL	0.242	IGLL1	0.172	ANKRD57	0.094
SERPINE2	0.318	EZH2	0.242	SPG3A	0.172	TFG	0.087
ADIPOR2	0.314	PRPSAP2	0.237	PPAP2A	0.172	LILRA6	0.080
GPR177	0.312	ISY1	0.235	NOTCH2NL	0.172	C6orf47	0.078
PDGFD^c	0.299	UGDH	0.234	TAF6	0.168	WDR60	0.075
LOC647460	0.294	ABCF2	0.230	CCDC90B	0.166	AHCYL2	0.068
WEE1	0.293	C16orf5	0.229	LOC731486	0.158	HAUS4	0.068
ITM2C	0.291	VAV3	0.225	CDH2	0.157	MAD2L2	0.053

^a Two probes map to the same gene GRK5. Combined selection probability is 1.06, implying that both get selected together at least some of the time
^b Illumina probe id 3NDg8gVCdQkNdcg.Ko, missing annotation
^c Two probes map to the same gene PDGFD. Combined selection probability is 0.766
^d Ilummina probe id Z6FIQGkeoCSiVAoKeg, missing annotation
^e Illumina probe id uX15cu4f_VUIuXoST0, missing annotation
^f Illumina probe id rh13dQX04hUS7uOpRQ, missing annotation

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ISSN: 1756-0500

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