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Table 1 Comparison of single-read mapping software

From: LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads

 BWA-SW [5]QIIME 2 [6]TMAP [7]LAMPS
Handles multiplexed readsa
Primer QC reports provided
2C-ChIP library normalization
Genome browser formatted output
Software dependenciesC
Javascript
PythonC
Python
Python
Bowtie 2
  1. aUsing the ‘q2-cutadapt’ plugin