LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads

BMC Research Notes

Table 1 Comparison of single-read mapping software

	BWA-SW [5]	QIIME 2 [6]	TMAP [7]	LAMPS
Handles multiplexed reads	✗	✓^a	✗	✓
Primer QC reports provided	✗	✗	✗	✓
2C-ChIP library normalization	✗	✗	✗	✓
Genome browser formatted output	✗	✗	✗	✓
Software dependencies	C Javascript	Python	C Python	Python Bowtie 2

ISSN: 1756-0500