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TableĀ 3 Validated exome variants

From: Molecular comparison of pure ovarian fibroma with serous benign ovarian tumours

Sample CHR POS REF ALT Consequence Gene Amino acids Condel PolyPhen SIFT SiftTransficLabel Validation
A42 11 821679 T G MS PNPLA2 F/C Deleterious (0.702) Prob_damaging (0.984) Tolerated (0.11) Low_impact Somatic
A42 19 897480 G A MS R3HDM4 P/L Deleterious (0.481) Prob_damaging (0.996) Tolerated (0.37) Low_impact Somatic
A4 2 197090514 T C MS HECW2 Y/C Deleterious (0.935) Prob_damaging (0.999) Deleterious (0) High_impact Somatic
A4 5 35068332 C A MS PRLR A/S Neutral (0.019) Benign (0.026) Tolerated (0.38) Medium_impact Somatic
A4 16 9943623 C T MS GRIN2A V/I Neutral (0.000) Benign (0.002) Tolerated (1) Low_impact Somatic
A4 19 4448308 C G SRV UBXN6 . . . . . Somatic
A4 19 38692604 G C MS SIPA1L3 G/A Neutral (0.001) Benign (0.002) Tolerated (0.82) Low_impact Somatic
A17 X 31222107 C A NS DMD E/* . . . . Somatic
IC158 3 47127761 T C MS SETD2 H/R Deleterious (0.808) Prob_damaging (0.96) Deleterious (0.01) Medium_impact Somatic
IC158 1 44156598 C T MS KDM4A P/L Deleterious (0.881) Prob_damaging (0.987) Deleterious (0) High_impact Somatic
IC158 7 96639132 C T MS DLX6 R/C Deleterious (0.877) Prob_damaging (0.985) Deleterious (0) High_impact Somatic
IC158 7 100484701 G A MS SRRT V/M Deleterious 0.892) Prob_damaging (0.992) Deleterious (0) Medium_impact Somatic
IC158 14 102504858 G T MS DYNC1H1 G/V Deleterious (0.886) Prob_damaging (0.99) Deleterious (0) High_impact Somatic
IC158 16 21726339 G A MS OTOA A/T Neutral (0.021) Benign (0.042) Tolerated (0.37) Low_impact Somatic
IC467 12 49422612 T C MS KMT2D K/R Deleterious (0.543) Prob_damaging (0.994) Deleterious (0) NA Somatic
IC467 17 11603150 A G MS DNAH9 K/E Deleterious (0.832) Prob_damaging (0.942) Deleterious (0) Medium_impact Somatic
IC467 19 51582924 C A MS KLK14 R/M Neutral (0.346) Benign (0.231) Tolerated (0.06) Medium_impact Somatic
IC467 19 54313656 C A MS NLRP12 E/D Neutral (0.028) Benign (0.113) Tolerated (0.37) Low_impact Somatic
IC467 X 5811262 C T MS NLGN4X A/T Neutral (0.199) Poss_damaging (0.47) Tolerated (0.21) Low_impact Somatic
IC467 X 77112855 T C MS MAGT1 N/S Neutra (0.002) Benign (0.014) Tolerated (0.76) Low_impact Somatic
  1. MS missense, NS nonsense, SRV splice receptor variant