Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Transcriptome assembly contigs | Fasta file (.fasta) | Figshare https://doi.org/10.6084/m9.figshare.12326177.v5 [19] |
Data file 2 | Summary for alignment of clean reads to reference transcriptome | Document file (.docx) | |
Data file 3 | Functional annotation from non-redundant nucleotide NCBI | BLAST output in txt/-outfmt 6 option (.txt) | |
Data file 4 | Functional annotation from non-redundant protein NCBI | BLAST output in XML/-outfmt 5 option (.xml) | |
Data file 5 | Functional annotation from protein sequence database of SwissProt | BLAST output in XML/-outfmt 5 option (.xml) | |
Data file 6 | Functional annotation from protein sequence database of TrEMBL | BLAST output in txt/-outfmt 6 option (.txt) | |
Data file 7 | Statistics related to contig length distribution and the Blast results: e-value distribution, contig similarity distribution, top-hit species distribution | PNG files in compressed file (.zip) | |
Data file 8 | Functional annotation from Complete TREP nucleotide database | BLAST output in txt/-outfmt 6 option (.txt) | |
Data file 9 | Functional annotation from Hypothetical TREP protein database | BLAST output in txt/-outfmt 6 option (.txt) | |
Data file 10 | Assessing transcriptome assembly and annotation completeness with single-copy orthologs by BUSCO | BUSCO output in txt (.txt) | |
Data file 11 | Gene Ontology and KEGG analysis | Blast2GO file (.b2g) | |
Data file 12 | Open Reading Frames (ORFs) prediction | Fasta File (.fasta) | |
Data file 13 | Results of microsatellite region finding | Misa file (.txt) | |
Data set 1 | Raw RNA‐seq. reads and assembled contigs | Fastq files (.fastq) | DNA Data Base of Japan (https://identifiers.org/insdc.sra:DRP005979 [20] |