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Table 1 Details of the 20 microsatellite primer pairs tested for cross-amplification in paca

From: Heterologous microsatellite primers are informative for paca (Cuniculus paca), a large rodent with economic and ecological importance

ID

Sequence (5′ to 3′)

Repeat motif

Ta (ºC)

Size range (bp)

References

CUY5

F: GGCCAAAGCAGGAATGTCTA

CA

55

141–163

Aviles et al. [24]

R: TAGGGCAAGCATTGATGATG

CUY6*

F: TGGCTTGCTTTCTCTTTGGT

CA

55

158–168

R: CTGTGCTCAGCATTGCATTT

CUY7

F: GATGCAGTGCAGAGGAGTCA

CA

55

183–197

R: TGTGTGGTTTTGTGTGTGAGG

CUY8*

F: TGATTGCACCTGAGAAGTGG

TC

55

181–217

R: CCAAGTGTTCTTGGTGCTTG

CUY9

F: GCTGGAATGCAAGACAAGC

GT

55

116–130

R: TGAGTTTTCAGCTGTGATGAGT

CUY10*

F: TTCCAAGCATTTCAGAAAACA

GT

55

106–128

R: TGACTTCCCAACCAAGGAAA

CUY17

F: TGATGGACAATATACTGGGAACC

TC

55

152–170

R: TAGCATGCATGAAGCCCTAA

CUY18*

F: TGTCACTTCTCACTCCACCA

CA

55

176–214

R: TCCCAAACCTCTTGTTTGCT

CUY22

F: CGAACATGCCAAGCAGATTA

TC

55

206–232

R: ACACCAGTTCCTTGCCACAT

CAVY2

F: GGCCATTATGCCCCCCAAC

AC

55

124–154

R: AGCTGCTCCTTGTGCTGTAG

CAVY11*

F: CCGTGCTTTTCCTGTCTTTG

CT

55

140–180

R: TGGACCCCAATCTGACATAG

CAVY12

F: AGAATGCCTTTGGGACTGG

AG

55

143–187

R: AGATCTTGCCTCTGCACTTG

CAPY1*

F: GGAATTCCAAAAGACAACAGTTA

(GT)12

59

185

Herrera et al. [26]

R: TCTCTCCTCAAAACAACAACAGA

CAPY4

F: ACACAGGTGCATTTGGCATA

(GT)12

60

190–192

R: ATGAGGATGTGGCAGAAAGG

CAPY6

F: ATGGGGACTCCAGCAAGTTA

(GT)5AT-(GT)7

56

289

R: AGATACATGCCTTCCCCAAA

CAPY7*

F: CCTCAACATCCGTTTTCCTC

(GT)16

60

272–278

R: CCCAAGGGTTGAAACACAGT

CAPY9

F: TGCCATTCTTGTGAAAGGTG

(GT)17

60

152–162

R: TGCCCGTTTCAGTGTGTACT

CAPY10

F: CAAGGCTTCTGCTCACTCATT

(GCT)9

56

182

R: TGAGGCATGCAAGAGCAA

CAPY12

F TGGGTGCCAGAATGCATAGTC

(GT)10

61

195–197

R: GCATTGCCACCCCTACCTTA

CAPY24

F: TGCAGGGAGCACTTTATCCA

(GT)7-TT-(GT)8

54

145–157

R: CAAGCTGGGCACAAAAAGGA

  1. The 12 primer pairs developed for guinea pigs (Aviles et al. [24]) and the 8 primer pairs developed for capybara (Herrera et al. [26]) are detailed in the table. Reported for each primer are the identification (ID), the forward primer sequence (F), the reverse primer sequence (R), the published annealing temperature (Ta), the published expected fragment size (bp), and original reference for these primers. An “*” highlights the seven of heterologous primer pairs that could not be consistently scored and interpreted. The repeat motif numbers were not reported in Aviles et al. [24]