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Table 1 Overview of data sets

From: Sequencing of E. coli strain UTI89 on multiple sequencing platforms

Label Name of data file/data set File types
(file extension)
Data repository and identifier (DOI or accession number)
Data set 1 New UTI89 genomic data XLSX (containing data on FASTQ files) Figshare (https://doi.org/10.6084/m9.figshare.12195663)
Data set 2 Previously published UTI89 genomic data XLSX (containing data on FASTQ files) Figshare (https://doi.org/10.6084/m9.figshare.12195675)
Applied Biosystems SOliD 3 (new) UTI89 – SoliD 3 LMP FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4387579 [7]; https://identifiers.org/ncbi/insdc.sra:SRR7517573 [8]; https://identifiers.org/ncbi/insdc.sra:SRR8247388 [9])
Ion Torrent PGM (new) UTI89/pBAD33 – IonTorrent FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4225380 [11]; https://identifiers.org/ncbi/insdc.sra:SRR7352157 [12])
Pacific Biosciences RSII (XL/C2) (new) SLC-66 – PacBio XL/C2 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4387449 [13]; https://identifiers.org/ncbi/insdc.sra:SRR7517443 [14]; https://identifiers.org/ncbi/insdc.sra:SRR7525090 [15])
Illumina NextSeq 500 (new) UTI89 – NextSeq 500 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4223297 [16]; https://identifiers.org/ncbi/insdc.sra:SRR7349974 [17])
Oxford Nanopore MinION Mk 1b FLO-MIN106 (R9.4) (new) UTI89 – MinION R9.4 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX4387499 [18]; https://identifiers.org/ncbi/insdc.sra:SRR7517493 [19])
Pacific Biosciences RSII (P6-C4) (new) UTI89 – PacBio P6-C4 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX5058882 [20]; https://identifiers.org/ncbi/insdc.sra:SRX5058883 [21]; https://identifiers.org/ncbi/insdc.sra:SRR8240630 [22]; https://identifiers.org/ncbi/insdc.sra:SRR8240631 [23])
Roche 454 (previous) [4] UTI89 - 454 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:SRX000179 [24]; https://identifiers.org/ncbi/insdc.sra:SRR000868 [25]; https://identifiers.org/ncbi/insdc.sra:SRR000869 [26]; https://identifiers.org/ncbi/insdc.sra:SRR000870 [27]; https://identifiers.org/ncbi/insdc.sra:SRR000871 [28]; https://identifiers.org/ncbi/insdc.sra:SRR000872 [29]; https://identifiers.org/ncbi/insdc.sra:SRR000873 [30])
Illumina Hiseq 2000 (previous) [5] UTI89 – HiSeq 2000 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:ERX632843 [31]; https://identifiers.org/ncbi/insdc.sra:ERX632844 [32]; https://identifiers.org/ncbi/insdc.sra:ERR687900 [33]; https://identifiers.org/ncbi/insdc.sra:ERR687901 [34])
Oxford Nanopore MinION R7 (previous) [6] UTI89 – MinION R7 FASTQ NCBI Sequence Read Archive (https://identifiers.org/ncbi/insdc.sra:ERX987748 [35]; https://identifiers.org/ncbi/insdc.sra:ERR908493 [36])