Skip to main content

Table 1 Overview of data files/data sets

From: Generating long-read sequences using Oxford Nanopore Technology from Diospyros celebica genomic DNA

Label

Name of data file/data set

File types (extension)

Data repository and identifier (DOI or accession number)

Data file 1

List of ebony samples and Nanopore Native barcodes

Compressed XLSX file (.zip)

https://doi.org/10.6084/m9.figshare.13027991.v1 [13]

Data file 2

Raw reads statistics and plots (quality score, reads length, reads distribution)

Compressed TXT, PNG and HTML files (.zip)

https://doi.org/10.6084/m9.figshare.13028069.v1 [14]

Data file 3

Polished De novo genome contig assemblies of both assembler

Compressed FASTA files (.zip)

https://doi.org/10.6084/m9.figshare.13031195.v1 [15]

Data file 4

Statistics of corrected contig assemblies with Diospyros celebica chloroplast

Compressed PDF file (.zip)

https://doi.org/10.6084/m9.figshare.13028177.v1 [16]

Data file 5

Statistics of corrected contig assemblies with Diospyros lotus genome

Compressed PDF file (.zip)

https://doi.org/10.6084/m9.figshare.13028180.v1 [17]

Data file 6

Constructed scaffolds from both assembler

Compressed FASTA files (.zip)

https://doi.org/10.6084/m9.figshare.13031702.v1 [18]

Data file 7

Statistics of scaffolds assemblies with Diospyros celebica chloroplast

Compressed PDF file (.zip)

https://doi.org/10.6084/m9.figshare.13031693.v1 [19]

Data file 8

GenBank annotation from scaffolds assemblies

Compressed GB files (.zip)

https://doi.org/10.6084/m9.figshare.13031708.v1 [20]

Data file 9

Annotation visualization from scaffolds assemblies

Compressed JPG files (.zip)

https://doi.org/10.6084/m9.figshare.13031714.v1 [21]

Data set 1

Raw genomic DNA reads (trimmed barcode)

FASTQ files (.fastq)

DNA Data Base of Japan (DRP006615) https://identifiers.org/insdc.sra:DR006615 [22]