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Table 1 Overview of data files/data sets

From: Broadly sampled orthologous groups of eukaryotic proteins for the phylogenetic study of plastid-bearing lineages

Label

Name of data file/data set

File types (file extension)

Data repository and identifier (DOI or accession number)

Additional file 1

Methods

PDF file (.pdf)

Figshare https://doi.org/10.6084/m9.figshare.13604102.v3 [18]

Data file 1

Taxonomic sampling

Image file (.png)

Figshare https://doi.org/10.6084/m9.figshare.13603511.v1 [19]

Data set 1

Proteome set description

Text files (.csv,.html)

Figshare https://doi.org/10.6084/m9.figshare.13113893.v1 [20]

Data set 2

Proteome files

FASTA files (.tar.gz)

Figshare https://doi.org/10.6084/m9.figshare.13573424.v2 [21]

Data file 2

BUSCO report

Text file (.csv)

Figshare https://doi.org/10.6084/m9.figshare.13235045.v1 [22]

Data set 3

Forty-Two reports and configuration files

Text files (.tsv,.csv,.yaml)

Figshare https://doi.org/10.6084/m9.figshare.13235063.v3 [23]

Data file 3

Orthogroup properties

Image file (.pdf)

Figshare https://doi.org/10.6084/m9.figshare.13312622.v1 [24]

Data set 4

Orthogroups

FASTA files, YAML configuration file (.tar.gz)

Figshare https://doi.org/10.6084/m9.figshare.13573658.v3 [25]

Data set 5

Clans

FASTA files (.tar.gz)

Figshare https://doi.org/10.6084/m9.figshare.13573415.v1 [26]

Data file 4

Organelle database

Text file (.tsv)

Figshare https://doi.org/10.6084/m9.figshare.13246841.v1 [27]

Data file 5

Plastid-targeted proteins

Spreadsheet (.xlsx)

Figshare https://doi.org/10.6084/m9.figshare.13246784.v1 [28]

Data file 6

eggNOG OG annotations

Text file (.tsv)

Figshare https://doi.org/10.6084/m9.figshare.13415048.v1 [29]

Data file 7

eggNOG clan annotations

Text file (.tsv)

Figshare https://doi.org/10.6084/m9.figshare.13415060.v1 [30]