(a) log2 fold change of the indicated gene after HPP at 400 MPa as determined by RNA-seq for RO15 and ScottA (Duru et al. [8]) or microarray for S2542 (Bowman et al. [9]) | |||
---|---|---|---|
Gene | RO15 (RNA-seq, Duru et al. [8]) log2 fold change | ScottA (RNA-seq, Duru et al. [8]) log2 fold change | S2542 (microarray, Bowman et al. [9]) log2 fold change |
agrB | − 0.35 | − 0.15 | 2.84 |
hly | 0.89 | 2.57 | − 4.34 |
ftsE | − 1.11 | − 0.66 | 2.71 |
clpE | 2.26 | 2.27 | − 3.93 |
mscL | 0.24 | 0.33 | 1.04 |
Pearson correlation with S2542 | − 0.87 | − 0.99 |
(b) log2 fold change of the indicated gene immediately after HPP at 400 MPa as determined by ddPCR for all three strains (this study) | |||
---|---|---|---|
Gene | RO15 | ScottA | S2542 |
agrB | − 0.10 | − 0.16 | − 0.32 |
hly | − 0.02 | 0.34 | 0.36 |
ftsE | − 0.30 | − 0.06 | 0.20 |
clpE | 0.27 | 0.27 | 0.57 |
mscL | 0.01 | − 0.73 | 0.83 |
Pearson correlation with S2542 | 0.49 | − 0.24 |
(c) log2 fold change of the indicated gene immediately after HPP at 400 MPa and storage for 24 h as determined by ddPCR for all three strains (this study) | |||
---|---|---|---|
Gene | RO15 | ScottA | S2542 |
agrB | 0.36 | 0.09 | 0.59 |
hly | − 0.06 | 0.08 | 0.45 |
ftsE | 0.02 | 0.60 | 1.78 |
clpE | 0.28 | 0.21 | 0.35 |
mscL | 0.57 | 0.82 | 2.30 |
Pearson correlation with S2542 | 0.38 | 0.97 |