Exon | SNP ID | Type of Samples (n) | Allele | AF (%) | Genotype | GF (%) | Samples (n) | HWE p values | Fisher’s p value |
---|---|---|---|---|---|---|---|---|---|
13 | SNP 1536 C > T rs374670788 | Control (114) | C T | 99 1 | CC CT TT | 99 1 0 | 113 1 0 | 0.962 | – |
Colon (54) | C T | 99 1 | CC CT TT | 98 2 0 | 53 1 0 | 0.945 | 0.540 | ||
Bladder (16) | C T | 97 3 | CC CT TT | 94 6 0 | 15 1 0 | 0.897 | 0.231 | ||
14 | Mutation 1648 G > A | Control (113) | G A | 100 0 | GG GA AA | 100 0 0 | 113 0 0 | – | – |
Colon (64) | G A | 95.3 4.7 | GG GA AA | 91 9 0 | 58 6 0 | 0.693 | 0.0019 | ||
Lung (10) | G A | 75 25 | GG GA AA | 50 50 0 | 5 5 0 | 0.291 | 0.000001 | ||
Ovary (11) | G A | 86.33 13.64 | GG GA AA | 73 27 0 | 8 3 0 | 0.600 | 0.0005 | ||
Bladder (16) | G A | 81.25 18.75 | GG GA AA | 63 38 0 | 10 6 0 | 0.355 | 0.000001 | ||
Thyroid (9) | G A | 88.89 11.11 | GG GA AA | 78 22 0 | 7 2 0 | 0.707 | 0.004 | ||
15 | Mutation 1769 A > G | Control (97) | A G | 100 0 | AA AG GG | 100 0 0 | 97 0 0 | – | – |
Colon (37) | A G | 99 1 | AA AG GG | 97 3 0 | 36 1 0 | 0.933 | 0.246 | ||
Mutation 1804 G > A | Control (97) | A G | 100 0 | AA AG GG | 100 0 0 | 97 0 0 | – | – | |
Colon (37) | G A | 99 1 | GG GA AA | 97 3 0 | 36 1 0 | 0.933 | 0.246 | ||
Mutation 1815 C > T | Control (97) | C T | 100 0 | CC CT TT | 100 0 0 | 97 0 0 | – | ||
Colon (37) | C T | 99 1 | CC CT TT | 97 3 0 | 36 1 0 | 0.933 | 0.246 | ||
16 | Mutation 1896T > A | Control (114) | T A | 100 0 | TT TA AA | 100 0 0 | 114 0 0 | – | – |
Colon (64) | T A | 98.4 1.6 | TT TA AA | 90 10 0 | 62 2 0 | 0.898 | 0.127 | ||
Ovary (10) | T A | 95 5 | TT TA AA | 90 10 0 | 9 1 0 | 0.867 | 0.08 | ||
Thyroid (9) | T A | 77.8 22.2 | TT TA AA | 55.6 44.4 0 | 5 4 0 | 0.391 | 0.00001 | ||
SNP 1913 C > T rs571064657 | Control (114) | C T | 99.12 0.88 | CC CT TT | 98.25 1.75 0 | 112 2 0 | 0.924 | – |