Table 1 LC–MS data obtained from the glucose-associated L. agilis transcriptome in the absence of rRNA
From: Epitranscriptomic profile of Lactobacillus agilis and its adaptation to growth on inulin
Ribonucleoside detected and its short name | Retention timea (min) | Measured massb (Da) | Mass accuracyc (ppm) |
|---|---|---|---|
Cytidine, C | 0.90 | 244.0935 | 0.7 |
Dihydrouridine, D | 0.94 | 247.0933 | 3.3 |
Pseudouridine, Y | 0.98 | 245.0775 | 3.0 |
1-Methyladenosine, m1A | 1.55 | 282.1205 | 3.1 |
5-Methylcytidine, m5C | 1.63 | 258.1093 | 3.2 |
Uridine, U | 2.00 | 245.0776 | 3.3 |
7-Methylguanosine, m7G | 2.54 | 298.1155 | 3.1 |
2′-O-Methylcytidine, Cm | 2.79 | 258.1093 | 3.2 |
2′-O-Methylpseudouridine, Ym | 2.99 | 259.0934 | 3.5 |
Guanosine, G | 3.99 | 284.0997 | 2.8 |
5-Methyluridine, m5U | 4.06 | 259.0933 | 3.2 |
Adenosine, A | 4.45 | 268.1048 | 2.8 |
3-Methyluridine, m3U | 4.86 | 259.0933 | 3.1 |
1-Methylguanosine, m1G | 5.27 | 298.1155 | 3.2 |
2′-O-Methylguanosine, Gm | 5.27 | 298.1155 | 3.2 |
N2-methylguanosine, m2G | 5.53 | 298.1155 | 3.2 |
N4-acetylcytidine, ac4C | 5.61 | 286.1034 | 0.2 |
2′-O-Methyladenosine, Am | 5.64 | 282.1204 | 2.8 |
N6-methyladenosine, m6A | 6.31 | 282.1206 | 3.2 |
N6,N6-dimethyladenosine, m6,6A | 7.93 | 296.1354 | 0.2 |
N6-threonylcarbamoyladenosine, t6A | 8.04 | 413.1417 | 0.8 |