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Table 1 Main alternative approaches for annotation prediction with GAPGOM tools

From: GAPGOM—an R package for gene annotation prediction using GO metrics

Approach

Tool

Property

Annotation

Benchmarka

1

lncRNA2GOA

Expression

GO

TopoICSim

2

lncRNA2GOA

Expression

Class

2 × 2

3

TopoICSim

GO

Class

2 × 2

  1. a2 × 2 represents benchmarking using a confusion matrix over true and false positive and negative predictions
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BMC Research Notes

ISSN: 1756-0500

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