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Table 1 Main alternative approaches for annotation prediction with GAPGOM tools

From: GAPGOM—an R package for gene annotation prediction using GO metrics

Approach Tool Property Annotation Benchmarka
1 lncRNA2GOA Expression GO TopoICSim
2 lncRNA2GOA Expression Class 2 × 2
3 TopoICSim GO Class 2 × 2
  1. a2 × 2 represents benchmarking using a confusion matrix over true and false positive and negative predictions