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Table 1 Genome annotation information for the SD strains

From: Genomic characterization of bacteria from the ultra-oligotrophic Madison aquifer: insight into the archetypical LuxI/LuxR and identification of novel LuxR solos

Genbank accession no.

Organism, South Dakota (SD) No.

Genome Size (bps)

No. of contigs

GC %

N50 (bp)

Genome Coverage (X)

Based on Pairwise Tetra-correlation test of JSpecies WS

ANIa

Quorum-sensing players luxIa LuxRb

JADDRN000000000

SD018

6,255,096

86

66.90

178,584

68.40

Delftia sp. RIT313

97.81

JADILJ000000000

SD072

3,885,184

122

71.60

69,363

80.53

Rathayibacter caricis DSM 15,933

87.98

JADILK000000000

SD075

5,379,599

166

40.20

96,640

71.10

Bacillus simplex NBRC 15,720 = DSM 1321 NBRC 15,720

94.04

JADILL000000000

SD083

6,204,245

111

66.95

99,487

74.01

Delftia lacustris

94.45

JADIJK000000000

SD088

5,371,606

81

38.44

166,199

92.75

Bacillus galactosidilyticus

80.73

JADIJL000000000

SD090

5,485,233

151

36.10

107,620

68.48

Pseudogracilibacillus auburnensis

97.49

JADIJM000000000

SD115

6,977,688

115

65.9

218,129

57.68

Achromobacter xylosoxidans

88.47

 + 

1 solo

JADIJN000000000

SD129

4,909,100

54

53.62

448,601

64.75

Ochrobactrum pseudogrignonense

84.43

 + 

 + , + , + 

2 solos

JADIJO000000000

SD226

2,375,156

209

73.22

21,313

113.46

Micrococcus luteus (GCA_000828165) 2385

97.48

-

-

JADIJP000000000

SD274

5,158,613

99

66.1

145,262

61.48

Methylobacterium sp. Leaf86

97.15

-

 + 

1 solo

JADIJQ000000000

SD287

3,022,529

66

68.57

39,964

143.85

Tessaracoccus flavescens

71.13

-

-

JADIJR000000000

SD291

3,528,957

88

69.24

119,791

92.89

Microbacterium oxydans

80.59

-

-

JADIJS000000000

SD316

4,833,691

24

53.52

1,040,937

59.06

Ochrobactrum pituitosum CCUG 50,899

96.53

-

 + , + , + 

3 solos

JADIJT000000000

SD340

6,349,462

387

64.10

40,898

47.08

Acidovorax sp. root275

87.94

 + , + 

 + , + 

  1. ANI represents the average nucleotide identity calculated by JSpecies. Dashes indicate that the gene for comparison was not sequenced in the corresponding type strain
  2. aThe antiSMASH platform [12] was used to identify luxI gene(s) in each genome
  3. bThe GenBank accession number AFP89744.1 was used to identify luxR(s) gene(s)