Table 1 Overview of data files/dataset
Label | Name of data | File types (extension) | Data repository and accession number |
|---|---|---|---|
Dataset 1 | Raw RNA-seq reads | Fastq files (.fastq) | DNA Data Bank of Japan (DDBJ) accession number DRP007012 https://trace.ddbj.nig.ac.jp/DRASearch/study?acc=DRP007012 [24] |
Data file 1 | Transcriptome assembly contigs | Fasta file (.fasta) | Figshare https://doi.org/10.6084/m9.figshare.14058458.v1 [25] |
Data file 2 | Summary for alignment of clean reads to reference transcriptome | Document file (.docx) | |
Data file 3 | Open reading frames (ORFs) prediction | Fasta file (.fasta) | |
Data file 4 | Open reading frames (ORFs) summary | Document file (.docx) | |
Data file 5 | Functional annotation from non-redundant (nr) protein NCBI | BLAST output in XML/-outfmt 5 option | |
Data file 6 | Functional annotation from non-redundant nucleotide (nt) NCBI | Text file (.txt) | Figshare https://doi.org/10.6084/m9.figshare.14058458.v1 [23] |
Data file 7 | Functional annotation from Swiss-Prot | Text file (.txt) | |
Data file 8 | Functional annotation from TrEMBL UniProt | Text file (.txt) | |
Data file 9 | Statistics related to contig length distribution and the Blast results: e-value distribution, contig similarity distribution, top-hit species distribution | Compressed PNG files (.rar) | |
Data file 10 | Gene Ontology and KEGG analysis | Blas2GO file (.b2g) | |
Data file 11 | Summary of gene ontology | Compressed text files (.rar) | |
Data file 12 | KEGG Pathway Summary | Text file (.txt) | |
Data file 13 | Results of microsatellite region finding | MISA file (.misa) | |
Data file 14 | Statistics of microsatellite regions | STATISTICS file (.statistics) |