Skip to main content

Table 1 Overview of data files/dataset

From: De novo transcriptome assembly data for sengon (Falcataria moluccana) trees displaying resistance and susceptibility to boktor stem borers (Xystrocera festiva Pascoe)

Label Name of data File types (extension) Data repository and accession number
Dataset 1 Raw RNA-seq reads Fastq files (.fastq) DNA Data Bank of Japan (DDBJ) accession number DRP007012 https://trace.ddbj.nig.ac.jp/DRASearch/study?acc=DRP007012 [24]
Data file 1 Transcriptome assembly contigs Fasta file (.fasta) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1 [25]
Data file 2 Summary for alignment of clean reads to reference transcriptome Document file (.docx) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 3 Open reading frames (ORFs) prediction Fasta file (.fasta) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 4 Open reading frames (ORFs) summary Document file (.docx) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 5 Functional annotation from non-redundant (nr) protein NCBI BLAST output in XML/-outfmt 5 option Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 6 Functional annotation from non-redundant nucleotide (nt) NCBI Text file (.txt) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1 [23]
Data file 7 Functional annotation from Swiss-Prot Text file (.txt) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 8 Functional annotation from TrEMBL UniProt Text file (.txt) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 9 Statistics related to contig length distribution and the Blast results: e-value distribution, contig similarity distribution, top-hit species distribution Compressed PNG files (.rar) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 10 Gene Ontology and KEGG analysis Blas2GO file (.b2g) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 11 Summary of gene ontology Compressed text files (.rar) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 12 KEGG Pathway Summary Text file (.txt) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 13 Results of microsatellite region finding MISA file (.misa) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1
Data file 14 Statistics of microsatellite regions STATISTICS file (.statistics) Figshare https://doi.org/10.6084/m9.figshare.14058458.v1