Skip to main content

Table 1 Percent identity of amino acid (aa) sequences for polyproteins (total 3140 aa) and nucleotide (nt) sequences for the complete genome (total 9736 nt) of new isolates and other PPV strains

From: Genome sequence analysis of new plum pox virus isolates from Japan

Amino acid identity (%)
  PPV1 PPV3 PPV4 PPV5 PPV6 PPV11 PPV12
City isolated: Kawanishi Itami Itami Amagasaki Itami Kawanishi Ome
Region in Japan: West West West West West West East
PPV-D: Canada (Vulcan) 99.33 99.24 99.20 99.20 99.01 99.20 99.11
 PPV-D: East-Japan (Ou1) 99.68 99.62 99.59 99.59 99.43 99.62 99.62
 PPV-D: West-Japan (It2079) 99.81 99.84 99.81 99.84 99.71 99.87 99.62
PPV-Rec (BOR-3) 98.15 98.03 97.80 97.99 97.83 97.99 98.03
PPV-M (PS) 96.50 96.53 96.43 96.43 96.37 96.46 96.43
PPV-T (AbTk) 96.46 96.43 96.43 96.34 96.21 96.37 96.34
PPV-An (AL11pl) 95.06 95.06 95.00 95.03 94.90 94.97 94.94
PPV-EA (El Amar) 91.21 91.18 90.92 91.08 91.08 91.18 91.18
PPV-C (BY181) 88.60 88.66 88.28 88.47 88.44 88.60 88.63
PPV-CR (RU-30sc) 88.50 88.54 88.28 88.44 88.44 88.57 88.54
PPV-W (LV-145bt) 88.38 88.54 88.22 88.38 88.28 88.41 88.41
PPV-CV (Tat-2) 88.03 87.96 87.80 87.87 87.87 87.96 87.87
Nucleic acid identity (%)
New isolate: PPV12       
PPV-D: East-Japan (Ou1) 99.52       
PPV-D: West-Japan (It2079) 99.31       
  1. Percentages in bold indicate the highest values