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Table 1 Percent identity of amino acid (aa) sequences for polyproteins (total 3140 aa) and nucleotide (nt) sequences for the complete genome (total 9736 nt) of new isolates and other PPV strains

From: Genome sequence analysis of new plum pox virus isolates from Japan

Amino acid identity (%)

 

PPV1

PPV3

PPV4

PPV5

PPV6

PPV11

PPV12

City isolated:

Kawanishi

Itami

Itami

Amagasaki

Itami

Kawanishi

Ome

Region in Japan:

West

West

West

West

West

West

East

PPV-D: Canada (Vulcan)

99.33

99.24

99.20

99.20

99.01

99.20

99.11

 PPV-D: East-Japan (Ou1)

99.68

99.62

99.59

99.59

99.43

99.62

99.62

 PPV-D: West-Japan (It2079)

99.81

99.84

99.81

99.84

99.71

99.87

99.62

PPV-Rec (BOR-3)

98.15

98.03

97.80

97.99

97.83

97.99

98.03

PPV-M (PS)

96.50

96.53

96.43

96.43

96.37

96.46

96.43

PPV-T (AbTk)

96.46

96.43

96.43

96.34

96.21

96.37

96.34

PPV-An (AL11pl)

95.06

95.06

95.00

95.03

94.90

94.97

94.94

PPV-EA (El Amar)

91.21

91.18

90.92

91.08

91.08

91.18

91.18

PPV-C (BY181)

88.60

88.66

88.28

88.47

88.44

88.60

88.63

PPV-CR (RU-30sc)

88.50

88.54

88.28

88.44

88.44

88.57

88.54

PPV-W (LV-145bt)

88.38

88.54

88.22

88.38

88.28

88.41

88.41

PPV-CV (Tat-2)

88.03

87.96

87.80

87.87

87.87

87.96

87.87

Nucleic acid identity (%)

New isolate:

PPV12

      

PPV-D: East-Japan (Ou1)

99.52

      

PPV-D: West-Japan (It2079)

99.31

      
  1. Percentages in bold indicate the highest values