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Table 1 Pyrenophora tritici-repentis race 1 isolate Ptr134 Oxford Nanopore genome information and assembly statistics compared to race 1 isolate M4 and version 1 short read assembly of Ptr134

From: The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing

  Ptr134 Version2 aM4 aPtr134 Version1
Isolate information
 Sequencing Platform Oxford Nanopore PacBio RSII and BioNano Optical Map Illumina (150 bp paired end)
 Genome accession MVBF02000000 NQIK00000000 MVBF01000000
 Collection site Queensland, Australia Western Australia, Australia Queensland, Australia
 Collection year 2001 2009 2001
 Date sequenced 2019 2017 2017
Contig assembly statistics
 Total length (Mb) 40.7 40.9 34.0
 Number 28 51 3579
 N50 (Mb) 2.687 2.930 0.064
 Mean (Kb) 1456 802 9.5
 Max (Mb) 6.50 5.60 0.29
 GC % 50.1 50.7 50.8
Predicted genes
 Protein coding genes 13,918 13,797 11,072
 % Complete bBUSCO 94.3 92.1 94.3
  1. aPreviously published genome assemblies
  2. bBenchmarking Universal Single-Copy Orthologs (BUSCO)