Table 1 Pyrenophora tritici-repentis race 1 isolate Ptr134 Oxford Nanopore genome information and assembly statistics compared to race 1 isolate M4 and version 1 short read assembly of Ptr134
Ptr134 Version2 | aM4 | aPtr134 Version1 | |
|---|---|---|---|
Isolate information | |||
Sequencing Platform | Oxford Nanopore | PacBio RSII and BioNano Optical Map | Illumina (150 bp paired end) |
Genome accession | MVBF02000000 | NQIK00000000 | MVBF01000000 |
Collection site | Queensland, Australia | Western Australia, Australia | Queensland, Australia |
Collection year | 2001 | 2009 | 2001 |
Date sequenced | 2019 | 2017 | 2017 |
Contig assembly statistics | |||
Total length (Mb) | 40.7 | 40.9 | 34.0 |
Number | 28 | 51 | 3579 |
N50 (Mb) | 2.687 | 2.930 | 0.064 |
Mean (Kb) | 1456 | 802 | 9.5 |
Max (Mb) | 6.50 | 5.60 | 0.29 |
GC % | 50.1 | 50.7 | 50.8 |
Predicted genes | |||
Protein coding genes | 13,918 | 13,797 | 11,072 |
% Complete bBUSCO | 94.3 | 92.1 | 94.3 |