Transcriptome profiles of the skeletal muscle of mature cows during feed restriction and realimentation

BMC Research Notes

Table 1 Pathways identified by Database for Annotation, Visualization and Integrated Discovery (DAVID) and Ingenuity Pathway Analysis (IPA) containing genes over-represented of cows during feed restriction and ad libitum periods

Program	Term^a	# Genes^b	P	Genes^c
DAVID	Lysosome	10	0.0008	CD63, NAGPA, AP1M1, AP1M2, CTSA, ENTPD4, GALC, GGA1, M6PR, MCOLN1
	Aminoacyl-tRNA biosynthesis	4	0.06	MARS, MARS2, SARS2, VARS
	Glutathione metabolism	3	0.09	GSTM2, GSTM3, SRM
	Renin-angiotensin system	3	0.09	ACE, ACE3, CTSA
	Phototransduction	3	0.1	GRK1, CNGB1, RCVRN
	Phototransduction^d	3	0.008	*GRK7, GUCA1A, GUCA1B*

^aTerm representing the shared functional annotation or canonical pathway of the differentially expressed genes that were over-represented in the list
^bNumber of DEG identified within the biological process
^cOfficial gene symbol of the genes identified as differentially expressed for each term
^dTerm in bold represents up-regulated genes from cows during feed restriction compared to ad libitum periods. Plain text illustrates genes down-regulated during feed restriction compared to ad libitum

ISSN: 1756-0500