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Table 1 SnakeCube’s performance

From: SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments

Dataset Raw-data size Genome size estimation Busco C, % Published Busco, C% Serial run time Parallel execution time Time Saved, %
Hydropsyche tenuis 8.3 Gb MinION, 18.8 Gb Illumina paired-end 219 Mb 98.2 98.3 39.04 h 35h 26m 10
L. sceleratus 9.68 GB MinION, 57,3 Gb Illumina paired-end 373 Mb 96.7 96.2 31.13 h 27h 29m 13
Grus nigricollis 116.5 Gb MinION,
54.6 Illumina paired-end
1.23 Gb 94.7 97.7 216.73 h 172h 47m 20.5