Table 1 SnakeCube’s performance
From: SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments
Dataset | Raw-data size | Genome size estimation | Busco C, % | Published Busco, C% | Serial run time | Parallel execution time | Time Saved, % |
|---|---|---|---|---|---|---|---|
Hydropsyche tenuis | 8.3 Gb MinION, 18.8 Gb Illumina paired-end | 219 Mb | 98.2 | 98.3 | 39.04 h | 35h 26m | 10 |
L. sceleratus | 9.68 GB MinION, 57,3 Gb Illumina paired-end | 373 Mb | 96.7 | 96.2 | 31.13 h | 27h 29m | 13 |
Grus nigricollis | 116.5 Gb MinION, 54.6 Illumina paired-end | 1.23 Gb | 94.7 | 97.7 | 216.73 h | 172h 47m | 20.5 |