Table 1 Overview of data files/data sets
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | DNA extraction protocol | .io | Protocols.io, https://doi.org/10.17504/protocols.io.yvkfw4w [3] |
Data set 1 | Illumina raw sequences lane 1 | fastq | NCBI Sequence Read Archive, https://identifiers.org/insdc.sra:SRR15711138 [5] |
Data set 2 | Illumina raw sequences lane 2 | fastq | NCBI Sequence Read Archive, https://identifiers.org/insdc.sra:SRR15711137 [6] |
Data set 3 | Nanopore run 1 raw sequences | fastq | NCBI Sequence Read Archive, https://identifiers.org/insdc.sra:SRR15711136 [7] |
Data set 4 | Nanopore run 2 WGA raw sequences | fastq | NCBI Sequence Read Archive, https://identifiers.org/insdc.sra:SRR15711135 [8] |
Data set 5 | Nanopore run 3—WGA raw sequences | fastq | NCBI Sequence Read Archive, https://identifiers.org/insdc.sra:SRR15711134 [9] |
Data set 6 | Whole metagenome assembly (from Illumina sequences) | fasta | NCBI Assembly, https://identifiers.org/assembly:GCA_020423325.1 [10] |
Data set 7 | H. panacea genome assembly (bin 1 from Illumina sequences) | fasta | NCBI Assembly, https://identifiers.org/assembly:GCA_020423275.1 [11] |
Data set 8 | HOC36 bin assembly (from Illumina sequences) | fasta | NCBI Assembly, https://www.ncbi.nlm.nih.gov/assembly/GCA_020423265.1 [12] |
Data set 9 | Proteobacteria bin assembly (from Illumina sequences) | fasta | NCBI Assembly, https://identifiers.org/assembly:GCA_020423255.1 [13] |
Data set 10 | Nanopore only metagenome assembly | fasta | NCBI Assembly, https://www.ncbi.nlm.nih.gov/assembly/GCA_020423245.1 [14] |
Data set 11 | Hybrid nanopore-Illumina assembly | fasta | NCBI Assembly, https://identifiers.org/assembly:GCA_020423345.1 [15] |
Data file 2 | Supplementary material | Harvard Dataverse, https://doi.org/10.7910/DVN/DJYOOI [4] |