Skip to main content

Table 2 Potential genetic recombination events identified in tomato yellow leaf curl virus genomes as detected by Recombination Detection Program (RDP)

From: Genetic recombination among tomato yellow leaf curl virus isolates in commercial tomato crops in Kuwait drives emergence of virus diversity: a comparative genomic analysis

Potential recombinant

Major parent

Minor parent

Recombination detection methods

Recombination event #

P-value

Abdally6A (OL890669)

Abdally 11B ( OL890676)

EU635776.1

RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, 3Seq

12

8.578 E−30

EF054894.1

KJ830842.1

GU076444.1

RDP, GENECONV, BootScan, MaxChi, SiScan, 3Seq

16

6.075 E−26

GU076442.1

KF229722.1

GU076449.1

RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, 3Seq

22

8.755 E−23

JF451352.1

AF105975.1

AJ223505.1

RDP, GENECONV, MaxChi, Chimaera

29

1.701 E−16

GU076446.1

KJ830842.1

EF054894.1

RDP, GENECONV, MaxChi, Chimaera, SiScan, 3Seq

30

1.474 E−15

EF110890.1

JN990923.1

FJ439569.1

RDP, GENECONV, SiScan, 3Seq

33

9.571 E−14

GU076454.1

KF229721.1

GU076449.1

RDP, GENECONV, BootScan, MaxChi, SiScan, 3Seq

37

4.990 E−12

GU076444.1

KF229721.1

EU635776.1

RDP, GENECONV, MaxChi, Chimaera, SiScan, 3Seq

38

9.783 E−13

HE819240.1

GU076445.1

Abdally 3B (OL890670)

RDP, GENECONV, 3Seq

39

6.449 E−11

GU076440.1

HE819240.1

HM627883.1

RDP, GENECONV, BootScan, MaxChi, SiScan,

40

9.140 E−09

GU076441.1

TYLCV-13B RCA

GU076440.1

GENECONV, Chimaera, SiScan, 3Seq

44

6.548 E−13

HE819240.1

KJ830842.1

GU076440.1

RDP, GENECONV, MaxChi, Chimaera, SiScan, 3Seq

52

3.072 E−06

GU076441.1

KF229722.1

Abdally 13B ( OL890678)

RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, 3Seq

54

4.634 E−06

AJ519441.1

AJ223505.1

FJ439569.1

RDP, MaxChi, Chimaera, SiScan, 3Seq

55

7.900 E−07

Abdally 3B (OL890670)

EU635776.1

EF060196.1

RDP, GENECONV

56

2.381 E−04

EF054894.1

EF110890.1

AJ132711.1

RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, 3Seq

57

1.542 E-03

KF229722.1

GU076449.1

AJ132711.1

GENECONV, MaxChi, SiScan

63

1.032 E−12

GU076453.1

Abdally 3B (OL890670)

GU076454.1

MaxChi, Chimaera

67

1.050 E−02