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Table 2 Permutation testing significance cut-offs.

From: The effect of alternative permutation testing strategies on the performance of multifactor dimensionality reduction

Epistasis Model Permutation Distribution Cut-Off Prediction Error (%)
Number of Functional Loci Minor Allele Frequency Heritability 1 Locus 2 Locus 3 Locus 4 Locus 5 Locus Omnibus
2 0.2 3% 43.5 43.71 44.48 43.42 44.19 43.5
2 0.2 2% 43 42.5 43.83 43.84 43.82 41.25
2 0.2 1.5% 43.75 42.85 43.73 43.64 43.45 42.5
2 0.2 1% 43.5 42.75 44.12 45.05 44.24 41.84
2 0.2 0.5% 43.5 43.25 43.19 42.68 43.68 40.75
2 0.4 3% 42.75 43.75 44.12 43.15 44.22 41.02
2 0.4 2% 44.5 44.75 45 44.55 43.77 42.25
2 0.4 1.5% 44.25 43.5 42.46 42.34 43.62 40.25
2 0.4 1% 43 43.75 42.5 44.53 44.28 40.25
2 0.4 0.5% 43.5 43.25 43.31 44.2 43.2 41.5
3 0.2 3% 43.25 43.36 43.94 43.92 43.96 42.75
3 0.2 2% 43.25 42.5 44.09 44.14 45.71 41.5
3 0.2 1.5% 42.75 43.75 46.08 45.34 44.2 42.25
3 0.2 1% 42.75 43.75 43.85 43.47 44.36 42.5
3 0.2 0.5% 43.5 43.25 42.79 42.9 43.28 42.5
3 0.4 3% 43.25 43 45.5 45.74 45.15 42.5
3 0.4 2% 42.5 45 43.75 43.14 44.2 42.25
3 0.4 1.5% 42.75 45.25 44.22 45.56 43.74 42.5
3 0.4 1% 44.5 43 44.25 44.79 42.89 41.5
3 0.4 0.5% 43.25 44.5 43.86 44.92 44.5 42.09
4 0.2 3% 44.5 41.5 43.86 43.39 44.37 41.5
4 0.2 2% 43 42.6 43.29 45.76 45.13 42.5
4 0.2 1.5% 42.5 42.85 43.4 42.54 43.02 40.59
4 0.2 1% 43.75 43.1 43.16 44.07 44.15 41.22
4 0.2 0.5% 44 44 43.56 46.65 43.85 42.97
4 0.4 3% 44.5 43.25 44.49 44.03 45.2 41.07
4 0.4 2% 42.25 43.5 43.84 43.66 44.18 40.75
4 0.4 1.5% 42.25 43.5 45.25 44.08 42.64 41.49
4 0.4 1% 41.5 45 43.25 44.05 44.2 41.5
4 0.4 0.5% 41.75 44 44.85 44.4 43.41 41
5 0.2 3% 44.25 42.25 44.85 43.75 45.43 41
5 0.2 2% 42.75 43.5 44.63 45.32 46.04 41.05
5 0.2 1.5% 43.25 41.5 43.57 44.88 44.35 40.75
5 0.2 1% 43.75 44.62 45.1 43.54 45.06 41.71
5 0.2 0.5% 44 43.62 44.25 44.05 44.57 40.08
5 0.4 3% 43.5 42.5 43.75 43.99 43.11 41.25
5 0.4 2% 43.25 44 44.5 44.51 44.23 40.78
5 0.4 1.5% 45 43.5 44.97 44.96 43.83 42.5
5 0.4 1% 42.25 42.5 44.75 45.32 43.43 40.75
5 0.4 0.5% 44 43.25 43.5 45.14 45.01 39.75