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Table 1 PCR conditions, allele sizes and core motifs of new microsatellite loci that amplified in 24 different genotypes of pigeonpea

From: New microsatellite markers for pigeonpea (cajanus cajan (L.) millsp.)

SSR Name Core Motif Allele size range No. of alleles PIC1
CCttc002 (gaa)5g(gaa)5 184–215 5 0.63
CCttc004 (gaa)6 240–250 2 0.08
CCac003 (ca)8 175–198 5 0.72
CCttc005 (gaa)11gag(gaa)5gaggaagag(gaa)17 305–320 5 0.76
CCac004 (ta)5(tg)7ta(tg)4 243–245 2 0.08
CCttc007 (aga)5 265–275 4 0.54
CCtc003 (tc)8 175–190 2 0.07
CCtc005 (ag)20 165–185 4 0.59
CCtta006 (att)21 290–310 5 0.71
CCcttc001 (cttc)4 260–270 4 0.28
CCgaaa001 (cttt)4 220–225 2 0.37
Cccta001 (gat)5(tct)(gat)4 275–302 3 0.29
CCac006 (ca)10cg(ca)6 295–350 5 0.49
CCgtt002 (tgt)4 210–235 3 0.40
CCttc012 (ttc)7 170–190 3 0.42
CCac0071 (tg)(tc)2(tg)7 275–280 2 0.08
CCgtt003 (ttg)5(ttc)7 165–180 2 0.37
CCtc007 (tc)6 310–330 4 0.68
Ccac010 (ca)7 191–198 3 0.50
Ccac011 (gt)7 227–270 2 0.36
CCttc017 (aga)11(ggag)(gaa)4ga(gga)3a(gaa)16 145–150 3 0.37
Ccat006 (ta)7(ca)6 220–277 3 0.54
Cccta003 (gat)4 420–450 3 0.39
CCac015 (ac)4aa(ac)38c(ca)7 135–145 2 0.14
CCtc009 (tc)6 200–220 4 0.45
CCac0171 caccac(a)5(ca)6c(a)4 215–227 2 0.24
CCac018 (ac)6a 200–210 3 0.54
CCac019 (tg)6 130–135 2 0.36
CCac026 (ac)7 278–295 4 0.64
CCac030 (cata)3ta(tg)6 236–244 2 0.37
CCttc018 (aga)5 275–288 2 0.35
CCac027 (tg)7 295–300 2 0.21
CCttc019 (aag)13 220–245 6 0.66
CCttc020 (ctt)8 236–242 2 0.37
CCac029 (caa)(ca)6caa 160–180 3 0.33
  1. 1Polymorphism Information Content