Table 1 PCR conditions, allele sizes and core motifs of new microsatellite loci that amplified in 24 different genotypes of pigeonpea

(gaa)5g(gaa)5

184–215

5

0.63

(gaa)6

240–250

2

0.08

(ca)8

175–198

5

0.72

(gaa)11gag(gaa)5gaggaagag(gaa)17

305–320

5

0.76

(ta)5(tg)7ta(tg)4

243–245

2

0.08

(aga)5

265–275

4

0.54

(tc)8

175–190

2

0.07

(ag)20

165–185

4

0.59

(att)21

290–310

5

0.71

(cttc)4

260–270

4

0.28

(cttt)4

220–225

2

0.37

(gat)5(tct)(gat)4

275–302

3

0.29

(ca)10cg(ca)6

295–350

5

0.49

(tgt)4

210–235

3

0.40

(ttc)7

170–190

3

0.42

(tg)(tc)2(tg)7

275–280

2

0.08

(ttg)5(ttc)7

165–180

2

0.37

(tc)6

310–330

4

0.68

(ca)7

191–198

3

0.50

(gt)7

227–270

2

0.36

(aga)11(ggag)(gaa)4ga(gga)3a(gaa)16

145–150

3

0.37

(ta)7(ca)6

220–277

3

0.54

(gat)4

420–450

3

0.39

(ac)4aa(ac)38c(ca)7

135–145

2

0.14

(tc)6

200–220

4

0.45

caccac(a)5(ca)6c(a)4

215–227

2

0.24

(ac)6a

200–210

3

0.54

(tg)6

130–135

2

0.36

(ac)7

278–295

4

0.64

(cata)3ta(tg)6

236–244

2

0.37

(aga)5

275–288

2

0.35

(tg)7

295–300

2

0.21

(aag)13

220–245

6

0.66

(ctt)8

236–242

2

0.37

(caa)(ca)6caa

160–180

3

0.33