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Table 1 Performance of Entropic Profiler for larger genomes.

From: Entropic Profiler – detection of conservation in genomes using information theory

Name

Length

(Mbases)

Time

(s)

Memory

(MB)

Caenorhabditis elegans

97.6

75

171

Homo sapiens (CHR1)

239.2

164

290

Takifugu rubripes

382.7

263

411

Gallus gallus

940.1

611

1016

Danio rerio

1491.0

960

1567

  1. For each species name, the length of each sequence tested (in 106 bases), the total running time (in seconds) and the memory usage (megabytes) are reported.
  2. Note: The sequences can be assessed in the following links: Caenorhabditis elegans ftp://ftp.wormbase.org/pub/wormbase/genomes/c_elegans/sequences/dna/c_elegans.WS199.dna.fa.gz; Homo sapiens (CHR1) ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/CHR_01/hs_ref_chr1.fa.gz; Takifugu rubripes ftp://ftp.jgi-psf.org/pub/JGI_data/Fugu/v4.0/Takru4.allmasked.gz; Gallus gallus ftp://ftp.ncbi.nlm.nih.gov/genomes/Gallus_gallus/pre-release/contig_fasta/ref_placed.fa.gz; Danio rerio ftp://ftp.ensembl.org/pub/assembly/zebrafish/Zv8release/Zv8_contigs.fa.
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BMC Research Notes

ISSN: 1756-0500

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