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Table 1 Performance of Entropic Profiler for larger genomes.

From: Entropic Profiler – detection of conservation in genomes using information theory

Name Length (Mbases) Time (s) Memory (MB)
Caenorhabditis elegans 97.6 75 171
Homo sapiens (CHR1) 239.2 164 290
Takifugu rubripes 382.7 263 411
Gallus gallus 940.1 611 1016
Danio rerio 1491.0 960 1567
  1. For each species name, the length of each sequence tested (in 106 bases), the total running time (in seconds) and the memory usage (megabytes) are reported.
  2. Note: The sequences can be assessed in the following links: Caenorhabditis elegans ftp://ftp.wormbase.org/pub/wormbase/genomes/c_elegans/sequences/dna/c_elegans.WS199.dna.fa.gz; Homo sapiens (CHR1) ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/CHR_01/hs_ref_chr1.fa.gz; Takifugu rubripes ftp://ftp.jgi-psf.org/pub/JGI_data/Fugu/v4.0/Takru4.allmasked.gz; Gallus gallus ftp://ftp.ncbi.nlm.nih.gov/genomes/Gallus_gallus/pre-release/contig_fasta/ref_placed.fa.gz; Danio rerio ftp://ftp.ensembl.org/pub/assembly/zebrafish/Zv8release/Zv8_contigs.fa.