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Table 2 Performance comparison of different methods on a simulated large-scale dataset.

From: AntEpiSeeker: detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm

Methods

True positive rate

False discovery rate

SNPHarvester

26.5%

98.6%

Generic ACO

0

100%

AntEpiSeeker

66.7%

97.1%

AntEpiSeeker with minimized false positives

52.3%

18.8%