From: ANDES: Statistical tools for the ANalyses of DEep Sequencing
Number of Partitions | 1 | 2 | 4 | 10 |
---|---|---|---|---|
Number of Sequences/Partition | 2900 | 1450 | 725 | 290 |
Sequence Alignment Times: | 3179.73 | 882.88 | 282.43 | 74.37 |
(with clustalw2 -quicktree) | Â | 896.14 | 284.10 | 70.70 |
 |  |  | 275.90 | 70.83 |
 |  |  | 274.19 | 70.46 |
 |  |  |  | 71.59 |
 |  |  |  | 71.06 |
 |  |  |  | 70.69 |
 |  |  |  | 71.02 |
 |  |  |  | 71.28 |
 |  |  |  | 71.04 |
Parallel Time (max) | 3179.73 | 896.14 | 284.10 | 74.37 |
Serial Time (sum) | 3179.73 | 1779.02 | 1116.62 | 713.04 |
Profile Generation Times: | 11.50 | 7.61 | 2.76 | 1.11 |
 |  | 6.15 | 2.74 | 1.17 |
 |  |  | 2.93 | 1.09 |
 |  |  | 2.86 | 1.14 |
 |  |  |  | 1.13 |
 |  |  |  | 1.12 |
 |  |  |  | 1.16 |
 |  |  |  | 1.10 |
 |  |  |  | 1.17 |
 |  |  |  | 1.24 |
Parallel Time (max) | 11.50 | 7.61 | 2.93 | 1.24 |
Serial Time (sum) | 11.50 | 13.76 | 11.29 | 11.43 |
Profile Merge Times: | 0.00 | 0.30 | 0.63 | 1.57 |
Parallel Time (max) | 0.00 | 0.30 | 0.63 | 1.57 |
Serial Time (sum) | 0.00 | 0.30 | 0.63 | 1.57 |
Total Parallel Times | 3191.23 | 904.05 | 287.66 | 77.18 |
Total Serial Times | 3191.23 | 1793.08 | 1128.54 | 726.04 |
Parallel Speed Up Factor | 1.00 | 3.53 | 11.09 | 41.35 |
Serial Speed Up Factor | 1.00 | 1.78 | 2.83 | 4.40 |