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Table 1 This table shows the regions that were identified by KC-SMARTR as being significantly aberrated in the B- and T-cell lymphoma dataset.

From: KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data

Chromosome

Region (in kb)

Known VDJ loci in region

1

51300 - 51300

-

1

168900 - 170100

-

1

171600 - 171900

-

1

172800 - 176700

-

1

187500 - 188100

-

2

88800 - 89400

Ig* Kappa light chain

6

1800 - 4200

-

6

5400 - 6300

-

6

11100 - 11100

-

6

13200 - 17100

-

6

19800 - 23100

-

6

24300 - 24300

-

7

38100 - 38700

T-cell receptor Gamma

7

141900 - 142200

T-cell receptor Beta

14

21300 - 22200

T-cell receptor Alpha

14

105300 - 105900

Ig heavy chain

22

21300 - 21600

Ig Lambda light chain

  1. *Ig - Immunoglobulin
  2. All positive control regions (i.e. the regions that are known to be involved in VDJ recombination) were identified. Additionally, five regions on chromosome 1 and six regions on chromosome 6 were found.
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BMC Research Notes

ISSN: 1756-0500

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