Table 4 Haplotypes with frequencies > = 1.0% as determined by PHASE.
From: Association analysis of PRNP gene region with chronic wasting disease in Rocky Mountain elk
Haplotype | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
|---|---|---|---|---|---|---|---|---|
Marker | Â | Â | Â | Â | Â | Â | Â | Â |
g.371T > C1 | T | C | T | C | T | T | T | C |
g.986A > G1 | A | G | A | G | A | A | A | G |
g.598T > C2 | C | T | T | T | C | C | T | T |
g.655C > T2 | C | C | C | C | T | C | C | C |
g.918A > G2 | A | G | A | A | A | A | G | G |
g.1131C > G2 | C | G | C | C | C | G | G | C |
g.1456C > G2 | C | C | G | G | C | C | C | C |
g.1477C > T2 | T | C | C | C | T | T | C | C |
g.1591T > C2 | C | T | C | C | C | C | T | T |
g.17361G > A2 | A | G | G | G | A | A | G | G |
g.17918T > G2 | G | T | T | T | G | G | T | T |
g.18059C > T2 | C | T | T | T | C | C | T | C |
g.18308G > A2 | G | G | A | A | G | G | G | G |
g.18390A > T2 | A | T | A | A | A | A | T | A |
g.3C > T3 | C | T | C | C | C | C | T | C |
g.152T > C3 | T | C | C | C | T | T | C | T |
g.1104C > T3 | C | C | T | T | C | C | C | C |
Haplotype Frequency (%) | 71.2 | 10.1 | 6.0 | 1.4 | 1.2 | 1.0 | 1.0 | 1.0 |
Haplotype Frequency in captive animals (%) | 70.6 | 10.3 | 6.2 | 1.1 | 1.2 | 1.1 | 1.1 | 1.1 |
Haplotype Frequency in free-ranging animals (%) | 78.6 | 7.4 | 4.3 | 4.2 | 0.0 | 0.0 | 0.0 | 0.0 |