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Table 4 Aberrations in the centromere region

From: Evidences showing wide presence of small genomic aberrations in chronic lymphocytic leukemia

Ditag

Full-length (bp)

CLL sample

Chr.

Location

Sequence type

  

1

2

3

4

5

6

7

8

   

AAGCTTTCATTGGGATAACAGTGTTGAAGCTT

562

-

+

+

-

-

+

+

+

2p11.1

132722630-132722850

ALR/Alpha

 

893

-

+

-

-

-

-

+

-

2p11.1

91677156-91682632

ALR/Alpha

 

217

+

+

-

+

-

-

+

-

2p11.1

91677835-91680254

ALR/Alpha

AAGCTTTCCAGTTAAGCTTTCTGGGGAAGCTT

1067

+

+

+

+

+

+

+

-

2p11.1

91257036-91258039

 
 

1002

+

-

-

-

-

-

+

-

2p11.1

91257036-91258039

 

AAGCTTCTTTATGAGGAACAGTGTTGAAGCTT

216

+

+

+

+

-

-

+

-

2p11.1

91670531-91670746

ALR/Alpha

 

896

+

+

-

+

-

-

-

-

2p11.1

91670531-91686712

ALR/Alpha

 

901

+

-

-

-

-

-

+

-

2p11.1

91670531-91686712

ALR/Alpha

 

560

+

-

-

-

+

-

-

-

2p11.1

91655191-91672448

ALR/Alpha

 

2231

-

-

-

-

+

+

-

-

2p11.1

91670550-91684334

ALR/Alpha

AAGCTTCTGAGAATGCCATCCCAATGAAGCTT

686

+

-

-

-

-

-

+

-

2p11.1

91677155-91689898

ALR/Alpha

AAGCTTATTTGAGATGAAAGGAGTAGAAGCTT

1234

+

+

-

-

-

-

-

-

2p11.1

91664565-91688410

ALR/Alpha

 

726

+

+

+

+

+

+

+

-

2p11.1

91676309-91680254

ALR/Alpha

AAGCTTCAACACTGTTGTTCCCAATGAAGCTT

612

-

+

+

-

-

+

-

-

2p11.1

91676431-91689428

ALR/Alpha

AAGCTTCAATGGGATGAAGAGTGTTGAAGCTT

556

+

+

+

-

+

+

+

-

2p11.1

91684461-91685014

ALR/Alpha

 

894

-

-

+

-

-

-

+

-

2p11.1

91677156-91680254

ALR/Alpha

AAGCTTCAATTGGGATAACAGTGTTGAAGCTT

555

-

-

-

+

-

+

+

+

2p11.1

91677836-91680592

ALR/Alpha

AAGCTTCATTAGGGATAACAGTGTTGAAGCTT

555

+

+

-

-

-

+

-

-

2p11.1

91677156-91677709

ALR/Alpha

AAGCTTCATTGGGAACAACAGTGTTGAAGCTT

269

-

+

-

-

-

-

+

-

2p11.1

91677155-91677709

ALR/Alpha

AAGCTTCATTGGGATGGCATTCTCAGAAGCTT

685

+

-

-

-

-

-

-

-

2p11.1

91674610-91684466

ALR/Alpha

AAGCTTCTATTGGGATAACAGTGTTGAAGCTT

556

+

+

+

-

-

+

+

+

2p11.1

91672232-91680592

ALR/Alpha

 

893

-

+

-

-

-

-

+

+

2p11.1

91653836-91682632

ALR/Alpha

AAGCTTGACTCATTGCGTCTTATTCTAAGCTT

1179

-

+

+

+

+

+

+

-

2p11.1

91031886-91033063

ERVL-B4-int

AAGCTTAAAACTCCTTTATGAAAAGAAAGCTT

637

+

-

-

-

-

-

-

-

10q11.1

41848823-41861037

ALR/Alpha

AAGCTTAAACTCCGTGCATCAAAAGAAAGCTT

689

+

+

-

-

-

-

+

-

10q11.1

41718813-41720661

ALR/Alpha

 

1407

+

-

-

-

-

-

-

-

10q11.1

41718474-41727608

ALR/Alpha

 

601

+

-

-

-

-

-

-

-

10q11.1

41718888-41720661

ALR/Alpha

AAGCTTAAACTTCTTGTATGAAAAGAAAGCTT

2067

-

+

+

-

-

-

+

-

10q11.1

41847790-41864775

ALR/Alpha

 

1023

+

+

-

-

-

-

-

-

10q11.1

41718797-41729299

ALR/Alpha

 

970

+

-

-

-

-

-

-

-

10q11.1

41850170-41864775

ALR/Alpha

 

346

+

-

-

-

-

-

+

-

10q11.1

41718460-41719477

ALR/Alpha

AAGCTTCAACGCTGCGCTATTGAAGGAAGCTT

345

-

+

+

-

-

-

-

-

10q11.1

41726415-41729786

ALR/Alpha

 

860

+

+

+

+

+

+

+

+

12p11.1

34724897-34729300

ALR/Alpha

AAGCTTCAACTCTGTCCGCCTAAAGGAAGCTT

175

-

-

-

-

+

-

+

-

10q11.1

41719301-41720316

ALR/Alpha

AAGCTTCAACTCTGTGCATTGGCCTCAAGCTT

279

+

+

+

+

+

+

+

+

10q11.1

41849321-41850275

ALR/Alpha

 

622

+

+

+

+

-

+

+

-

10q11.1

41849321-41858079

ALR/Alpha

 

619

-

+

-

-

-

+

+

-

10q11.1

41849321-41861137

ALR/Alpha

AAGCTTCAACTCTGTGCCGCTAAAGGAAGCTT

344

-

+

+

-

+

+

+

+

10q11.1

41718623-41720492

ALR/Alpha

 

2280

+

-

-

-

-

+

-

-

10q11.1

41717944-41720994

ALR/Alpha

 

1359

+

-

-

-

-

-

-

-

10q11.1

41717944-41729975

ALR/Alpha

 

1190

+

-

-

-

-

-

-

-

10q11.1

41718623-41720492

ALR/Alpha

 

681

+

-

-

-

-

-

-

-

10q11.1

41720147-41729975

ALR/Alpha

AAGCTTCCTTCAGAAACAAGGAGTTTAAGCTT

858

+

-

+

-

+

+

+

-

10q11.1

41718623-41720661

ALR/Alpha

AAGCTTCCTTTTAGGCCACAGAGTTGAAGCTT

348

-

+

+

-

-

-

-

-

10q11.1

41719301-41720492

ALR/Alpha

 

1029

-

+

+

-

-

-

-

-

10q11.1

41847960-41861361

ALR/Alpha

 

684

+

-

-

-

-

-

+

-

10q11.1

41718622-41721845

ALR/Alpha

AAGCTTCCTTTTCATACAAGGAGTTTAAGCTT

1498

-

+

-

-

-

+

-

-

10q11.1

41718461-41720661

ALR/Alpha

AAGCTTCTTTTTCATGCAAGGAGTTTAAGCTT

385

+

-

-

-

+

+

+

-

10q11.1

41718767-41719477

ALR/Alpha

 

724

+

-

-

-

-

-

-

-

10q11.1

41718767-41720661

ALR/Alpha

 

722

+

-

-

-

-

-

-

-

10q11.1

41847452-41858698

ALR/Alpha

AAGCTTTCCTTTAGGCCACAGAGTTGAAGCTT

1904

-

+

+

-

-

-

-

-

10q11.1

41847960-41863582

ALR/Alpha

 

345

-

-

+

+

-

-

+

-

10q11.1

41720491-41722352

ALR/Alpha

AAGCTTTCTTTTTCATCAAGGAGTTTAAGCTT

386

+

-

-

-

-

-

-

-

10q11.1

41720293-41720661

ALR/Alpha

AAGCTTTGAAATCTCCCACCTAAAGGAAGCTT

408

+

-

+

+

+

+

+

-

10q11.1

41718623-41722413

ALR/Alpha

 

750

-

-

+

+

-

-

-

-

10q11.1

41847563-41863586

ALR/Alpha

 

1262

+

-

-

-

-

-

-

-

10q11.1

41718623-41720552

ALR/Alpha

AAGCTTTTCTTTTCATCAAGGAGTTTAAGCTT

1379

-

-

+

-

-

-

+

-

10q11.1

41718797-41720661

ALR/Alpha

 

691

-

-

+

-

-

+

-

-

10q11.1

41718460-41720661

ALR/Alpha

 

2041

+

-

-

-

-

-

-

-

10q11.1

41847790-41866145

ALR/Alpha

 

832

+

-

-

-

-

-

-

-

10q11.1

41718460-41720661

ALR/Alpha

 

347

-

-

-

+

-

+

+

-

10q11.1

41718460-41720661

ALR/Alpha

 

1024

+

+

-

-

-

+

+

-

10q11.1

41718117-41720661

ALR/Alpha

AAGCTTTTGAGGCCAACACAGAGTTGAAGCTT

620

-

+

-

-

-

+

+

+

10q11.1

41849321-41855026

ALR/Alpha

 

281

+

+

-

-

-

-

-

-

10q11.1

41849321-41850276

ALR/Alpha

AAGCTTCCTGTGATGATTCGAGAGAGAAGCTT

1419

+

+

-

-

+

+

-

-

17p11.1

22175465-22179262

ALR/Alpha

 

576

-

-

-

-

-

+

+

+

17p11.1

22182601-22184019

ALR/Alpha

 

1966

+

-

+

-

-

-

-

-

17p11.1

22175465-22186396

ALR/Alpha

 

2314

-

-

+

-

-

+

-

-

17p11.1

22173089-22186396

ALR/Alpha

 

234

+

+

+

+

-

+

-

+

17p11.1

22170709-22172128

ALR/Alpha

 

578

+

+

+

-

-

+

-

+

17p11.1

22176307-22179262

ALR/Alpha

 

1090

-

+

-

-

-

-

+

+

17p11.1

22170709-22179262

ALR/Alpha

AAGCTTTCTCTCTCGACATCACAGAGAAGCTT

641

+

-

-

-

-

-

-

-

17p11.1

22178721-22179262

ALR/Alpha

 

1389

+

-

-

-

-

-

-

-

17p11.1

22175464-22184019

ALR/Alpha

 

1824

+

-

-

-

-

-

-

-

17p11.1

22175464-22181640

ALR/Alpha

 

579

-

+

-

-

+

+

+

-

17p11.1

22170709-22179262

ALR/Alpha

 

1420

-

+

+

-

+

+

-

-

17p11.1

22180222-22184019

ALR/Alpha

AAGCTTCTCTCTCGAACATCGCAGAGAAGCTT

1091

+

-

-

-

-

+

-

+

17p11.1

22173083-22184019

ALR/Alpha

 

749

-

-

+

-

-

-

-

+

17p11.1

22183291-22184019

ALR/Alpha

AAGCTTCTCTGAGATGTTCGAGAGAGAAGCTT

579

+

+

+

+

-

-

+

+

17p11.1

22181236-22184019

ALR/Alpha

 

918

+

+

+

-

-

-

-

-

17p11.1

22173087-22184019

ALR/Alpha

 

407

-

+

-

+

-

+

-

-

17p11.1

22174101-22184019

ALR/Alpha

 

406

-

-

+

-

-

-

-

+

17p11.1

22175464-22176883

ALR/Alpha

 

1087

+

-

-

-

-

-

-

-

17p11.1

22175459-22181640

ALR/Alpha

AAGCTTCTGAGAATGCTTTTCTGAAAAAGCTT

355

+

+

-

-

+

+

+

-

17p11.1

22184624-22184977

ALR/Alpha

 

1037

+

-

-

-

-

-

-

-

17p11.1

22184624-22186848

ALR/Alpha

AAGCTTTGAGACCTGTCTCAGAGTTGAAGCTT

799

+

+

+

-

+

+

+

-

17p11.1

21687309-21687527

ALR/Alpha