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Figure 2 | BMC Research Notes

Figure 2

From: Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation

Figure 2

Two cluster calling. Rare variant and two-cluster genotyping was successful for the majority of samples assessed on the VeraCode platform as demonstrated in rs17011642 (A). Incorrect rare variant calling was observed for SNP rs12988908, with the heterozygous samples being called homozygous for the mutant allele (B). Non-autosomal variants were correctly genotyped in most cases as demonstrated in SNP rs5919392 (C). Only one X-linked SNP, rs17217069 was incorrectly genotyped with the mutant allele being called heterozygous.

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