From: The Supertree Tool Kit
Script Name | Function |
---|---|
Stk_amalagamate_trees | Create a single file from multiple tree files. |
Stk_check_data | Provides a consistency check on the current dataset. |
Stk_check_overlap | Ensures minimal taxonomic overlap between source trees in the dataset. |
Stk_check_substitutions | Checks that a substitution file will not introduce taxa into a dataset. Also checks formatting of a file. |
Stk_create_matrix | Create a MRP matrix file from a dataset. |
Stk_data_independence | Check the dataset for independence between source trees. |
Stk_data_summary | Prints a summary of a dataset, including taxa list and some basic statistics. |
Stk_fix_treeview | Converts tree files produced in TreeView [20] to standard NEXUS format. |
Stk_replace_genera | Converts a dataset to species-level (as far as possible). |
Stk_replace_taxa | Enables substitutions or removal of taxa from a dataset or file. |
Stk_search_data | Searches phylogenetic- and meta-data. Can also create a copy from the returned results. |
Stk_tree_permutation | Uses a modified NEXUS file to create all permutations of taxa positions for paraphyletic taxa. |