QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards

Table 1 Average running times on the full dataset

Sampling rate	0.25	0.75	1
Running time for 10 repetitions	00:00:04	00:00:07	00:00:11
Running time for 100 repetitions	00:00:54	00:03:30	00:04:46
Running time for 1000 repetitions	00:40:15	03:09:14	05:09:52

The full dataset contained 26,803 protein pairs including 105 known in the literature. Times were averaged over two runs and were recorded on an AMD Opteron (64 bits, 2.3 GHz) processor-based computer.

ISSN: 1756-0500