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Table 1 Summary statistics for the SSRs found in the H. midae library.

From: Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis

SSR type

SSR Number (4,707 contigs) Count/Percentage

SSR Number (181 contigs) Count/Percentage

Dinucleotide

6,059/77.4%

246/58.6%

Trinucleotide

1,103/14.1%

56/13.3%

Tetranucleotide

547/6.9%

96/22.9%

Pentanucleotide

55/0.7%

7/1.7%

Hexanucleotide

67/0.9%

15/3.5%

Total

7,831

420

  1. The second column indicates all the SSRs with at least four motif repetitions and the third column, the loci where primer pairs with stringent criteria were designed (see Material and Methods section).
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BMC Research Notes

ISSN: 1756-0500

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