Table 5 Comparison of Arapan-S with all QSRA, Minimus and Mira assemblers on Antelope coronavirus US/OH1/2003 genome
From: Arapan-S: a fast and highly accurate whole-genome assembly software for viruses and small genomes
Species | Assembler | Contigs ≥ 400 bp | Total Length | Mean size (bp) | N50 (bp) | Largest contig (bp) | Genome coverage |
|---|---|---|---|---|---|---|---|
Antelope coronavirus US/OH1/2003 | Arapan-S | 1 | 26280 | 26280 | 26280 | 26280 | 98.89 |
| Â | QSRA | 0 | 0 | 0 | 0 | 0 | 0 |
| Â | Minimus | 1 | 30994 | 30994 | 30994 | 30994 | 116.63 |
| Â | Mira | 5 | 33793 | 6758.6 | 31042 | 31042 | 116.81 |