Table 1 Results of correlation and Chi-square tests between 454 and genome variables
From: A shot in the genome: how accurately do shotgun 454 sequences represent a genome?
Correlation | Chi-square test | |||||
|---|---|---|---|---|---|---|
r | df* | P | χ 2 | df* | P | |
Number of dimers | 0.988 | NA | 2.2e-16 | 9126 | 9 | 2.2e-16 |
Number of trimers | 0.996 | NA | 2.2e-16 | 19275 | 31 | 2.2e-16 |
Number of dimers without AA/TT | 0.999 | 7 | 1.8e-10 | 3567 | 8 | 2.2e-16 |
Number of trimers without AAA/TTT | 0.996 | NA | 2.2e-16 | 10231 | 30 | 2.2e-16 |
Number of 454 reads per fragment | NA | NA | NA | 635.9 | 225 | 2.2e-16 |
Number of 454 reads per chromosome | 0.991 | NA | 3.2e-06 | 24.2 | 15 | 0.0624 |
Number of different microsatellite types (pooled by repeat unit length and repeat number) | 0.972 | 21 | 9.3e-15 | 187.5 | NA | 0.0005 |
Number of microsatellites with di-trinucleotide motifs (pooled by motif) | 0.969 | NA | 2.2e-16 | 77.9 | 13 | 2.713e-11 |
Number of different microsatellite types (pooled by repeat unit length) | 1 | NA | 0.016 | 8.7 | 4 | 0.0685 |