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Table 1 Identification of LPS affected biological processes using the GOstats/R package for gene ontology analysis

From: A framework to identify gene expression profiles in a model of inflammation induced by lipopolysaccharide after treatment with thalidomide

GOBPID

Pvalue

Count

Size

Term

GO:0006414

0.000

36

78

translational elongation

GO:0042274

0.000

7

8

ribosomal small subunit biogenesis

GO:0042254

0.000

10

20

ribosome biogenesis

GO:0051591

0.001

6

9

response to cAMP

GO:0042416

0.004

3

3

dopamine biosynthetic process

GO:0050818

0.004

10

26

regulation of coagulation

GO:0015711

0.005

10

27

organic anion transport

GO:0032365

0.007

4

6

intracellular lipid transport

GO:0030195

0.007

8

20

negative regulation of blood coagulation

GO:0045730

0.011

5

10

respiratory burst

GO:0045022

0.013

3

4

early endosome to late endosome transport

GO:0014805

0.013

3

4

smooth muscle adaptation

GO:0032367

0.013

3

4

intracellular cholesterol transport

GO:0045410

0.013

3

4

positive regulation of interleukin-6 biosynthetic process

GO:0060325

0.013

3

4

face morphogenesis

GO:0030198

0.014

13

44

extracellular matrix organization

GO:0002293

0.014

4

7

alpha-beta T cell differentiation during immune response

GO:0042093

0.014

4

7

T-helper cell differentiation

GO:0045980

0.014

4

7

negative regulation of nucleotide metabolic process

GO:0006323

0.017

13

45

DNA packaging

GO:0030595

0.017

9

27

leukocyte chemotaxis

GO:0006333

0.017

14

50

chromatin assembly or disassembly

GO:0046635

0.018

5

11

positive regulation of alpha-beta T cell activation

GO:0045732

0.020

7

19

positive regulation of protein catabolic process

GO:0033993

0.024

4

8

response to lipid

GO:0002318

0.024

2

2

myeloid progenitor cell differentiation

GO:0002523

0.024

2

2

leukocyte migration during inflammatory response

GO:0008588

0.024

2

2

release of cytoplasmic sequestered NF-kappaB

GO:0015808

0.024

2

2

L-alanine transport

GO:0015824

0.024

2

2

proline transport

GO:0018347

0.024

2

2

protein amino acid farnesylation

GO:0019614

0.024

2

2

catechol catabolic process

GO:0031440

0.024

2

2

regulation of mRNA 3'-end processing

GO:0032417

0.024

2

2

positive regulation of sodium:hydrogen antiporter activity

GO:0032510

0.024

2

2

endosome to lysosome transport via multivesicular body sorting pathway

GO:0033625

0.024

2

2

positive regulation of integrin activation

GO:0033630

0.024

2

2

positive regulation of cell adhesion mediated by integrin

GO:0034109

0.024

2

2

homotypic cell-cell adhesion

GO:0042420

0.024

2

2

dopamine catabolic process

GO:0042832

0.024

2

2

defense response to protozoan

GO:0043179

0.024

2

2

rhythmic excitation

GO:0045627

0.024

2

2

positive regulation of T-helper 1 cell differentiation

GO:0045628

0.024

2

2

regulation of T-helper 2 cell differentiation

GO:0048103

0.024

2

2

somatic stem cell division

GO:0048539

0.024

2

2

bone marrow development