Figure 1
From: Distribution and prediction of catalytic domains in 2-oxoglutarate dependent dioxygenases
Outline of protocol used to predict catalytic domains in user-defined sequences. Salient features of H2OGpred: the HMM profiles used, formulation of the query required to search the database for suitable matches, and a summary of the profiles found in the sequence(s) of interest. Other details include (not shown): instructions for use, general scheme of the 2-OG dependent reaction, and detailed scores used by HMMER-3.0 for profile assignment.