Table 3 Allele frequencies of the NR1H4 variants in the study population and the allele association analysis

SNP rs3863377 (G → A)

Case

MAF (%)

P

OR

CI

Reported MAFs ¹

non-IBD

32 (2.9)

4.0%

IBD

10 (1.1)

0.004** †

0.37

0.18-0-75

CD

6 (1.1)

0.015* †

0.36

0.15-0.86

UC

4 (1.2)

0.075 †

0.38

0.14-1.10

SNP rs56163822 , (G →T)

Case

MAF (%)

P

OR

CI

Reported MAFs ¹

non-IBD

20 (1.7)

2.2%

IBD

34 (3.2)

0.027*

1.86

1.06-3.25

CD

20 (2.9)

0.081

1.74

0.93-3.25

UC

14 (3.5)

0.036*

2.07

1.03-4.13

SNP rs7138843 , (A → T)

Case

MAF (%)

P

Reported MAFs ¹

non-IBD

17 (1.7)

0.9%

IBD

21 (2.4)

ns

CD

11 (2.0)

ns

UC

10 (3.0)

ns

†

SNP rs10860603 , (G → A)

Case

MAF (%)

P

Reported MAFs ¹

non-IBD

173 (14.9)

20.5%

IBD

139 (12.9)

ns

CD

90 (13.4)

ns

UC

49 (12.3)

ns

SNP rs35724 , (G → C)

Case

MAF (%)

P

Reported MAFs ¹

non-IBD

466 (40.0)

40.8%

IBD

471 (43.8)

ns

CD

299 (44.4)

ns

UC

172 (43.0)

ns