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Table 4 Main average indices in different sequencing strategies for 17 Salmonella genomes (400 bp read length, 3 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST GCE SBA IDR FLT FDT CN NB SN
6 × SE + 10 × PE 98.77307189 0.000523727 0.000125695 0 0.020605811 62 219592 17
10 × SE + 10 × PE 98.79345172 0.000439829 4.19E-05 0 0.020605811 51 224172 16
15 × SE + 10 × PE 98.71993949 0.001487248 4.19E-05 0 0.061817433 48 224247 15
20 × SE + 10 × PE 98.70417356 0.000796407 2.10E-05 0 0.061817433 48 224241 16
  1. ST: Sequencing Strategy
  2. SE: single end 454 FLX Titanium reads
  3. PE: paired end 454 FLX Titanium reads
  4. GCE: genome coverage rate of the assembly result
  5. SBA: single base accuracy rate of the assembly result
  6. IDR: indel rate of the assembly result
  7. FDT: false gene duplication rate of the assembly result
  8. CN: large contig number
  9. NB: N50 bp length of the assembly result
  10. SN: scaffold number