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Table 1 Genes with increased mRNA amounts in the wild-type compared to glnR deletion strain MH1 in response to nitrogen starvation

From: Nitrogen starvation-induced transcriptome alterations and influence of transcription regulator mutants in Mycobacterium smegmatis

Gene identifier Fold change Annotation
msmeg_3358 3.02 YaeQ protein
msmeg_4965 3.07 Hypothetical protein
msmeg_6507 3.07 Glycogen debranching enyme GlgX (glgX)
msmeg_1792 3.12 Conserved hypothetical protein
msmeg_4567 3.14 Conserved hypothetical protein
msmeg_4382 3.15 Dehydrogenase-reductase SDR family member 10
msmeg_4011 3.26 Putative pyrimidine permease RutG
msmeg_2116 3.33 PTS system, glucose-specific IIBC component
msmeg_4570 3.34 Conserved hypothetical protein
msmeg_2187 3.36 Urea amidolyase
msmeg_4569 3.48 Conserved hypothetical protein
msmeg_1292 3.48 FAD binding domain in molybdopterin dehydrogenase protein
msmeg_4171 3.58 Ribose transport system permease protein RbsC
msmeg_3994 3.64 Short chain dehydrogenase
msmeg_5648 3.68 Hypothetical protein
msmeg_2189 3.68 Allophanate hydrolase (atF)
msmeg_0393 3.73 Fmt protein
msmeg_1153 3.73 FAD dependent oxidoreductase
msmeg_6659 3.74 Hypothetical protein
msmeg_6332 3.79 Amino acid ABC transporter, permease protein
msmeg_3626 3.89 Urease, beta subunit (ureB)
msmeg_5083 4.00 Conserved hypothetical protein
msmeg_1152 4.01 Citrate-proton symporter
msmeg_5331 4.04 UDP-glucoronosyl and UDP-glucosyl transferase family
msmeg_1151 4.08 DNA-binding protein
msmeg_5783 4.10 Acetyltransferase, GNAT family
msmeg_1155 4.16 Carnitinyl-CoA dehydratase
msmeg_1157 4.17 Short chain dehydrogenase
msmeg_3912 4.20 Acetoacetyl-CoA reductase
msmeg_0565 4.33 Putative glycosyl transferases group 1
msmeg_1184 4.40 Serine esterase, cutinase family
msmeg_1156 4.44 Dihydrodipicolinate synthetase
msmeg_1185 4.46 Transcriptional regulator, AsnC family
msmeg_1089 4.61 Hypothetical protein
msmeg_1088 4.63 Glutamyl-tRNA(Gln)-aspartyl-tRNA(Asn) amidotransferase
msmeg_0505 4.72 Probable sugar ABC transporter, substrate-binding protein
msmeg_6880 4.92 Hydrophobic amino acid ABC transporter, putative
msmeg_6879 4.97 Nat permease for neutral amino acids NatD
msmeg_3722 5.04 Bifunctional coenyme PQQ synthesis protein C-D
msmeg_1596 5.05 Transcriptional regulator
msmeg_6264 5.06 Putative oxidoreductase
msmeg_2523 5.11 Efflux ABC transporter, permease protein, putative
msmeg_4381 5.14 Amidase
msmeg_1090 5.24 Amidase
msmeg_1508 5.54 Amino acid permease-associated region
msmeg_5729 5.75 Hydantoin racemase
msmeg_6733 6.32 Hydrolase, carbon-nitrogen family
msmeg_2748 6.36 Soluble pyridine nucleotide transhydrogenase (sthA)
msmeg_1085 6.41 Dipeptide transport system permease protein DppB
msmeg_2569 6.61 Oxidoreductase, 2OG-Fe(II) oxygenase family
msmeg_0429 6.64 Putative ferric uptake regulator
msmeg_6878 6.97 Inner-membrane translocator
msmeg_6263 7.01 Glutamate synthase family protein
msmeg_6262 7.40 FwdC-FmdC family protein
msmeg_1295 7.42 Transthyretin
msmeg_3402 7.82 Cytosine permease, putative
msmeg_5356 8.15 Hypothetical protein
msmeg_1296 8.73 Uricase
msmeg_0780 8.79 Phosphotransferase enyme family protein
msmeg_6877 8.90 Branched-chain amino acid transport system ATP-binding protein
msmeg_0566 8.94 Aliphatic amidase
msmeg_3403 9.26 Formamidase
msmeg_1990 9.45 Conserved hypothetical protein
msmeg_1086 9.94 ABC transporter permease protein
msmeg_0778 10.22 Putative transcriptional regulator
msmeg_6261 10.36 Glutamine amidotransferase, class II
msmeg_6660 10.75 Permease, cytosine-purines, uracil, thiamine, allantoin family
msmeg_6817 11.34 RNA polymerase sigma factor, sigma-70 family
msmeg_1052 11.63 Amino acid carrier protein
msmeg_6259 11.67 Ammonium transporter (amt1)
msmeg_6881 11.75 Transcriptional regulator, GntR family
msmeg_2185 12.81 Conserved hypothetical protein
msmeg_2525 14.19 Amino acid permease superfamily
msmeg_1293 14.73 Xanthine-uracil permeases family protein
msmeg_2978 15.78 ABC transporter ATP-binding protein
msmeg_6260 16.11 Glutamine synthetase, type III (glnT)
msmeg_4206 16.44 Molybdopterin oxidoreductase
msmeg_3400 17.66 Glutamyl-tRNA(Gln) amidotransferase subunit A
msmeg_0572 17.72 Conserved hypothetical protein
msmeg_2427 18.22 Protein P-II uridylyltransferase (glnD)
msmeg_4637 18.43 Conserved hypothetical protein
msmeg_3401 18.68 LamB-YcsF family protein
msmeg_1988 18.75 Conserved hypothetical protein
msmeg_1597 18.80 Transcription factor WhiB
msmeg_2979 18.88 ABC transporter ATP-binding protein
msmeg_2981 19.17 Branched-chain amino acid ABC-type transport system
msmeg_6115 19.21 Phosphoglycerate dehydrogenase
msmeg_6735 19.26 Amino acid permease, putative
msmeg_1087 19.33 Oligopeptide ABC transporter ATP-binding protein
msmeg_6116 19.89 Conserved hypothetical protein
msmeg_5084 20.59 Glycosyl transferase, group 2 family protein
msmeg_5359 21.35 Cyanate hydratase (cynS)
msmeg_5360 22.01 Formate-nitrate transporter
msmeg_4501 22.33 Sodium:dicarboxylate symporter
msmeg_4635 22.90 Ammonium transporter family protein
msmeg_2980 23.33 Putative membrane protein
msmeg_2524 24.34 ABC transporter, ATP-binding protein
msmeg_2522 24.38 Efflux ABC transporter, permease protein
msmeg_5358 25.10 Acetamidase-Formamidase family
msmeg_4294 26.01 Glutamine synthetase, type I (glnA)
msmeg_5765 29.55 Globin
msmeg_4638 30.14 Vanillate O-demethylase oxidoreductase
msmeg_4636 31.81 Hypothetical protein
msmeg_2186 32.35 Conserved hypothetical protein
msmeg_0570 32.58 Conserved hypothetical protein
msmeg_6816 33.03 Molybdopterin oxidoreductase
msmeg_0432 34.03 Uroporphyrinogen-III synthetase
msmeg_4290 34.13 Glutamine synthetase, type I (glnA)
msmeg_0569 34.95 Flavoprotein involved in K+ transport
msmeg_0779 35.16 Short-chain dehydrogenase-reductase SDR
msmeg_0781 36.20 Amino acid permease
msmeg_1987 42.51 Conserved hypothetical protein
msmeg_5730 45.31 Permease for cytosine-purines, uracil, thiamine, allantoin
msmeg_1082 47.68 Putative response regulator
msmeg_0571 48.04 Hydrolase, carbon-nitrogen family
msmeg_2184 48.27 Amino acid permease
msmeg_0428 48.97 Nitrite reductase [NAD(P)H] small subunit (nirD)
msmeg_2426 51.56 Nitrogen regulatory protein P-II (glnK)
msmeg_1084 51.81 Peptide-opine-nickel uptake family ABC transporter
msmeg_0427 52.06 Nitrite reductase [NAD(P)H], large subunit (nirB)
msmeg_0433 54.53 Nitrite extrusion protein
msmeg_2425 56.21 Ammonium transporter (amtB)
msmeg_6734 62.84 Dibenzothiophene desulfurization enzyme A
msmeg_2526 66.62 Copper methylamine oxidase
msmeg_2982 136.17 Putative periplasmic binding protein (urtA)