Table 1 Genes with increased mRNA amounts in the wild-type compared to glnR deletion strain MH1 in response to nitrogen starvation

msmeg_3358

3.02

YaeQ protein

msmeg_4965

3.07

Hypothetical protein

msmeg_6507

3.07

Glycogen debranching enyme GlgX (glgX)

msmeg_1792

3.12

Conserved hypothetical protein

msmeg_4567

3.14

Conserved hypothetical protein

msmeg_4382

3.15

Dehydrogenase-reductase SDR family member 10

msmeg_4011

3.26

Putative pyrimidine permease RutG

msmeg_2116

3.33

PTS system, glucose-specific IIBC component

msmeg_4570

3.34

Conserved hypothetical protein

msmeg_2187

3.36

Urea amidolyase

msmeg_4569

3.48

Conserved hypothetical protein

msmeg_1292

3.48

FAD binding domain in molybdopterin dehydrogenase protein

msmeg_4171

3.58

Ribose transport system permease protein RbsC

msmeg_3994

3.64

Short chain dehydrogenase

msmeg_5648

3.68

Hypothetical protein

msmeg_2189

3.68

Allophanate hydrolase (atF)

msmeg_0393

3.73

Fmt protein

msmeg_1153

3.73

FAD dependent oxidoreductase

msmeg_6659

3.74

Hypothetical protein

msmeg_6332

3.79

Amino acid ABC transporter, permease protein

msmeg_3626

3.89

Urease, beta subunit (ureB)

msmeg_5083

4.00

Conserved hypothetical protein

msmeg_1152

4.01

Citrate-proton symporter

msmeg_5331

4.04

UDP-glucoronosyl and UDP-glucosyl transferase family

msmeg_1151

4.08

DNA-binding protein

msmeg_5783

4.10

Acetyltransferase, GNAT family

msmeg_1155

4.16

Carnitinyl-CoA dehydratase

msmeg_1157

4.17

Short chain dehydrogenase

msmeg_3912

4.20

Acetoacetyl-CoA reductase

msmeg_0565

4.33

Putative glycosyl transferases group 1

msmeg_1184

4.40

Serine esterase, cutinase family

msmeg_1156

4.44

Dihydrodipicolinate synthetase

msmeg_1185

4.46

Transcriptional regulator, AsnC family

msmeg_1089

4.61

Hypothetical protein

msmeg_1088

4.63

Glutamyl-tRNA(Gln)-aspartyl-tRNA(Asn) amidotransferase

msmeg_0505

4.72

Probable sugar ABC transporter, substrate-binding protein

msmeg_6880

4.92

Hydrophobic amino acid ABC transporter, putative

msmeg_6879

4.97

Nat permease for neutral amino acids NatD

msmeg_3722

5.04

Bifunctional coenyme PQQ synthesis protein C-D

msmeg_1596

5.05

Transcriptional regulator

msmeg_6264

5.06

Putative oxidoreductase

msmeg_2523

5.11

Efflux ABC transporter, permease protein, putative

msmeg_4381

5.14

Amidase

msmeg_1090

5.24

Amidase

msmeg_1508

5.54

Amino acid permease-associated region

msmeg_5729

5.75

Hydantoin racemase

msmeg_6733

6.32

Hydrolase, carbon-nitrogen family

msmeg_2748

6.36

Soluble pyridine nucleotide transhydrogenase (sthA)

msmeg_1085

6.41

Dipeptide transport system permease protein DppB

msmeg_2569

6.61

Oxidoreductase, 2OG-Fe(II) oxygenase family

msmeg_0429

6.64

Putative ferric uptake regulator

msmeg_6878

6.97

Inner-membrane translocator

msmeg_6263

7.01

Glutamate synthase family protein

msmeg_6262

7.40

FwdC-FmdC family protein

msmeg_1295

7.42

Transthyretin

msmeg_3402

7.82

Cytosine permease, putative

msmeg_5356

8.15

Hypothetical protein

msmeg_1296

8.73

Uricase

msmeg_0780

8.79

Phosphotransferase enyme family protein

msmeg_6877

8.90

Branched-chain amino acid transport system ATP-binding protein

msmeg_0566

8.94

Aliphatic amidase

msmeg_3403

9.26

Formamidase

msmeg_1990

9.45

Conserved hypothetical protein

msmeg_1086

9.94

ABC transporter permease protein

msmeg_0778

10.22

Putative transcriptional regulator

msmeg_6261

10.36

Glutamine amidotransferase, class II

msmeg_6660

10.75

Permease, cytosine-purines, uracil, thiamine, allantoin family

msmeg_6817

11.34

RNA polymerase sigma factor, sigma-70 family

msmeg_1052

11.63

Amino acid carrier protein

msmeg_6259

11.67

Ammonium transporter (amt1)

msmeg_6881

11.75

Transcriptional regulator, GntR family

msmeg_2185

12.81

Conserved hypothetical protein

msmeg_2525

14.19

Amino acid permease superfamily

msmeg_1293

14.73

Xanthine-uracil permeases family protein

msmeg_2978

15.78

ABC transporter ATP-binding protein

msmeg_6260

16.11

Glutamine synthetase, type III (glnT)

msmeg_4206

16.44

Molybdopterin oxidoreductase

msmeg_3400

17.66

Glutamyl-tRNA(Gln) amidotransferase subunit A

msmeg_0572

17.72

Conserved hypothetical protein

msmeg_2427

18.22

Protein P-II uridylyltransferase (glnD)

msmeg_4637

18.43

Conserved hypothetical protein

msmeg_3401

18.68

LamB-YcsF family protein

msmeg_1988

18.75

Conserved hypothetical protein

msmeg_1597

18.80

Transcription factor WhiB

msmeg_2979

18.88

ABC transporter ATP-binding protein

msmeg_2981

19.17

Branched-chain amino acid ABC-type transport system

msmeg_6115

19.21

Phosphoglycerate dehydrogenase

msmeg_6735

19.26

Amino acid permease, putative

msmeg_1087

19.33

Oligopeptide ABC transporter ATP-binding protein

msmeg_6116

19.89

Conserved hypothetical protein

msmeg_5084

20.59

Glycosyl transferase, group 2 family protein

msmeg_5359

21.35

Cyanate hydratase (cynS)

msmeg_5360

22.01

Formate-nitrate transporter

msmeg_4501

22.33

Sodium:dicarboxylate symporter

msmeg_4635

22.90

Ammonium transporter family protein

msmeg_2980

23.33

Putative membrane protein

msmeg_2524

24.34

ABC transporter, ATP-binding protein

msmeg_2522

24.38

Efflux ABC transporter, permease protein

msmeg_5358

25.10

Acetamidase-Formamidase family

msmeg_4294

26.01

Glutamine synthetase, type I (glnA)

msmeg_5765

29.55

Globin

msmeg_4638

30.14

Vanillate O-demethylase oxidoreductase

msmeg_4636

31.81

Hypothetical protein

msmeg_2186

32.35

Conserved hypothetical protein

msmeg_0570

32.58

Conserved hypothetical protein

msmeg_6816

33.03

Molybdopterin oxidoreductase

msmeg_0432

34.03

Uroporphyrinogen-III synthetase

msmeg_4290

34.13

Glutamine synthetase, type I (glnA)

msmeg_0569

34.95

Flavoprotein involved in K⁺ transport

msmeg_0779

35.16

Short-chain dehydrogenase-reductase SDR

msmeg_0781

36.20

Amino acid permease

msmeg_1987

42.51

Conserved hypothetical protein

msmeg_5730

45.31

Permease for cytosine-purines, uracil, thiamine, allantoin

msmeg_1082

47.68

Putative response regulator

msmeg_0571

48.04

Hydrolase, carbon-nitrogen family

msmeg_2184

48.27

Amino acid permease

msmeg_0428

48.97

Nitrite reductase [NAD(P)H] small subunit (nirD)

msmeg_2426

51.56

Nitrogen regulatory protein P-II (glnK)

msmeg_1084

51.81

Peptide-opine-nickel uptake family ABC transporter

msmeg_0427

52.06

Nitrite reductase [NAD(P)H], large subunit (nirB)

msmeg_0433

54.53

Nitrite extrusion protein

msmeg_2425

56.21

Ammonium transporter (amtB)

msmeg_6734

62.84

Dibenzothiophene desulfurization enzyme A

msmeg_2526

66.62

Copper methylamine oxidase

msmeg_2982

136.17

Putative periplasmic binding protein (urtA)