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Table 1 A comparison between OGA, Neurocarta and the GWASdb diagram browser

From: OGA: an ontological tool of human phenotypes with genetic associations

 

OGA

Neurocarta*

GWASdb Diagram Browser

Number of links

205,707

30,000

91,301**

Number of concepts

2,294

2,000

622

Number of genes

11,349

7,000

7,511

Backbone

HPO

HPO, DO, MPO***

EFO

Curated

No

Yes

No

Statistical analysis

Yes

No

No

Interface

Standalone

Website

Website

  1. *The numbers for Neurocarta were taken from [7] **This number was calculated by matching the links from Experimetal Factor Ontology (EFO) to GWASdb (GWAS-EFO-mappings file from [13]). ***Disease Ontology (DO), Mouse Phenotype Ontology (MPO), Human Phenotype Ontology (HPO).
  2. This table shows the comparison between OGA, Neurocarta and GDB for several measures such as the total number of links, concepts and genes.
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BMC Research Notes

ISSN: 1756-0500

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