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Table 10 Alignment statistics of reads mapped against Flaviviridae genomes

From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing

Platform Sample Description Reads Mapped (% Mapped) Molecular Length (bp) Total Mapped (bp)
HeliScope Grand Plaza Bulk 1 93 (0.00%) 24.6 ± 0.8 2,284
  Grand Plaza Bulk 2 111 (0.00%) 24.6 ± 0.9 2,726
  Grand Plaza Phos. 1 112 (0.00%) 24.7 ± 0.9 2,762
  Grand Plaza Phos. 2 76 (0.00%) 24.8 ± 1.0 1,881
  Churchyard Bulk 1 122 (0.00%) 24.6 ± 1.3 3,004
  Churchyard Bulk 2 126 (0.00%) 24.7 ± 1.1 3,116
  Churchyard Phos. 1 106 (0.00%) 24.5 ± 0.8 2,602
  Churchyard Phos. 2 105 (0.00%) 24.5 ± 0.8 2,573
  Grand Plaza Sheared 0 (0.00%) 0
  Churchyard Sheared 0 (0.00%) 0
  Soil Bulk 3 (0.00%) 24.3 ± 0.6 73
  Soil Sheared 0 (0.00%) 0
HiSeq 2500 TP04 0 (0.00%) 0
  TP09 0 (0.00%) 0
  TP10 0 (0.00%) 0
  TP18 0 (0.00%) 0
  TP37 0 (0.00%) 0
  TP48 0 (0.00%) 0
  Soil Bulk 0 (0.00%) 0
  1. “Bulk” samples are the unsheared bulks. “Phos.” samples are the phosphatase-treated unsheared bulks. “Sheared” samples are the sheared bulks. “% Mapped” indicates the percentage of the total number of reads comprised by the reads mapped onto Flaviviridae genomes. “Molecular Length” is the mean length (± standard deviation) of the mapped reads.