Table 3 Alignment statistics of reads mapped against the human genome
From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing
Platform | Sample Description | Reads Mapped (% Mapped) | Molecular Length (bp) | Total Mapped (bp) |
|---|---|---|---|---|
HeliScope | Grand Plaza Bulk 1 | 254,977 (0.82%) | 25.2 ± 2.7 | 6,414,294 |
Grand Plaza Bulk 2 | 283,309 (0.77%) | 25.2 ± 2.8 | 6,013,180 | |
Grand Plaza Phos. 1 | 186,016 (0.71%) | 25.1 ± 2.5 | 4,668,531 | |
Grand Plaza Phos. 2 | 152,275 (0.66%) | 25.2 ± 2.7 | 3,838,807 | |
Churchyard Bulk 1 | 387,992 (1.34%) | 27.3 ± 5.3 | 10,579,724 | |
Churchyard Bulk 2 | 382,493 (1.41%) | 27.3 ± 5.3 | 10,425,423 | |
Churchyard Phos. 1 | 250,427 (0.88%) | 26.2 ± 4.3 | 6,559,094 | |
Churchyard Phos. 2 | 312,392 (1.05%) | 26.5 ± 4.7 | 8,290,314 | |
Grand Plaza Sheared | 254 (6.21%) | 24.5 ± 1.0 | 6,226 | |
Churchyard Sheared | 340 (6.40%) | 24.5 ± 0.8 | 8,325 | |
Soil Bulk | 9,441 (1.12%) | 24.9 ± 2.1 | 234,694 | |
Soil Sheared | 2,895 (2.35%) | 24.8 ± 1.9 | 71,816 | |
HiSeq 2500 | TP04 | 2,655 (0.03%) | 214.4 ± 39.6 | 569,144 |
TP09 | 27,430 (0.41%) | 192.1 ± 36.4 | 5.267,951 | |
TP10 | 1,332 (0.02%) | 204.9 ± 37.6 | 272,903 | |
TP18 | 5,521 (0.00%) | 201.7 ± 35.4 | 1,113,561 | |
TP37 | 6,172 (0.00%) | 191.0 ± 31.4 | 1,179,076 | |
TP48 | 300 (0.00%) | 208.6 ± 39.3 | 62,568 | |
Soil Bulk | 37 (0.00%) | 181.2 ± 34.0 | 6,706 |