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Table 7 Alignment statistics of reads mapped against Arenaviridae genomes

From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing

Platform Sample Description Reads Mapped (% Mapped) Molecular Length (bp) Total Mapped (bp)
HeliScope Grand Plaza Bulk 1 37 (0.00%) 25.9 ± 3.4 959
  Grand Plaza Bulk 2 24 (0.00%) 26.9 ± 4.6 646
  Grand Plaza Phos. 1 13 (0.00%) 24.5 ± 0.7 319
  Grand Plaza Phos. 2 15 (0.00%) 26.5 ± 3.8 397
  Churchyard Bulk 1 193 (0.00%) 26.3 ± 3.7 5,071
  Churchyard Bulk 2 254 (0.00%) 26.3 ± 3.4 6,673
  Churchyard Phos. 1 65 (0.00%) 26.3 ± 3.7 1,711
  Churchyard Phos. 2 110 (0.00%) 26.8 ± 4.1 2,946
  Grand Plaza Sheared 0 (0.00%) 0
  Churchyard Sheared 0 (0.00%) 0
  Soil Bulk 2 (0.00%) 24. 5 ± 0.7 49
  Soil Sheared 0 (0.00%) 0
HiSeq 2500 TP04 0 (0.00%) 0
  TP09 0 (0.00%) 0
  TP10 0 (0.00%) 0
  TP18 0 (0.00%) 0
  TP37 0 (0.00%) 0
  TP48 0 (0.00%) 0
  Soil Bulk 0 (0.00%) 0
  1. “Bulk” samples are the unsheared bulks. “Phos.” samples are the phosphatase-treated unsheared bulks. “Sheared” samples are the sheared bulks. “% Mapped” indicates the percentage of the total number of reads comprised by the reads mapped onto Arenaviridae genomes. “Molecular Length” is the mean length (± standard deviation) of the mapped reads.