Skip to main content

Advertisement

Table 8 Alignment statistics of reads mapped against Bunyaviridae genomes

From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing

Platform Sample Description Reads Mapped (% Mapped) Molecular Length (bp) Total Mapped (bp)
HeliScope Grand Plaza Bulk 1 8 (0.00%) 24.5 ± 0.9 196
  Grand Plaza Bulk 2 10 (0.00%) 24.4 ± 0.5 244
  Grand Plaza Phos. 1 6 (0.00%) 24.3 ± 0.8 146
  Grand Plaza Phos. 2 3 (0.00%) 25.0 ± 1.0 75
  Churchyard Bulk 1 10 (0.00%) 24.3 ± 0.5 243
  Churchyard Bulk 2 16 (0.00%) 24.3 ± 0.6 388
  Churchyard Phos. 1 10 (0.00%) 24.6 ± 0.5 246
  Churchyard Phos. 2 15 (0.00%) 24.6 ± 0.7 369
  Grand Plaza Sheared 0 (0.00%) 0
  Churchyard Sheared 0 (0.00%) 0
  Soil Bulk 0 (0.00%) 0
  Soil Sheared 0 (0.00%) 0
HiSeq 2500 TP04 0 (0.00%) 0
  TP09 0 (0.00%) 0
  TP10 0 (0.00%) 0
  TP18 0 (0.00%) 0
  TP37 0 (0.00%) 0
  TP48 0 (0.00%) 0
  Soil Bulk 0 (0.00%) 0
  1. “Bulk” samples are the unsheared bulks. “Phos.” samples are the phosphatase-treated unsheared bulks. “Sheared” samples are the sheared bulks. “% Mapped” indicates the percentage of the total number of reads comprised by the reads mapped onto Bunyaviridae genomes. “Molecular Length” is the mean length (± standard deviation) of the mapped reads.