Table 4 Comparison of expression levels (log2 ration) from qRT-PCR and microarray for selected target genes
Target gene | MSU Gene ID | Microarray value | qRT-PCR value |
|---|---|---|---|
(log2ratio) | (log2ratio) | ||
Zinc finger, C3HC4 type, domain containing protein, expressed | Os07g29600 | 0.73 | 0.14 |
bZIP transcription factor domain containing protein, expressed | Os07g48180 | −0.04 | −0.7 |
Ankyrin repeat-rich protein, putative, expressed | Os08g15840 | −0.99 | −0.66 |
bZIP transcription factor domain containing protein, expressed | Os08g26880 | 1.42 | 1.19 |
Zinc finger family protein, putative, expressed | Os08g03310 | 4.58 | 4.99 |
MYB family transcription factor, putative, expressed | Os08g33660 | 3.93 | 2.8 |
B-box zinc finger family protein, putative, expressed | Os09g35880 | 0.93 | 0.97 |
Zinc finger, C3HC4 type domain containing protein, expressed | Os09g33670 | −0.13 | −0.12 |
MYB family transcription factor, putative, expressed | Os09g36250 | 0.75 | 0.2 |
OsWRKY80 - Superfamily of TFs having WRKY and zinc finger domains, expressed | Os09g30400 | −0.17 | −0.48 |
BHLH transcription factor, putative, expressed | Os09g32510 | 2.66 | 1.73 |
Zinc finger, C3HC4 type domain containing protein, expressed | Os09g26400 | −0.17 | −0.53 |
Dof zinc finger domain containing protein, putative, expressed | Os09g29960 | 2.57 | 2.71 |
Auxin response factor 18, putative, expressed | Os10g33940 | −1.11 | −0.32 |
Transcription factor, putative, expressed | Os12g13170 | −0.08 | 0.66 |
ZOS12-05 - C2H2 zinc finger protein, expressed | Os12g31840 | −0.45 | −0.38 |
OsRR4 type-A response regulator, expressed | Os01g72330 | 2.53 | 2.42 |
Inducer of CBF expression 2, putative, expressed | Os01g70310 | 4.86 | 4.05 |
PHD finger protein, putative, expressed | Os01g66420 | 0.02 | −0.28 |
SNF2 family N-terminal domain containing protein, expressed | Os02g02290 | 0.14 | 0.11 |
MYB family transcription factor, putative, expressed | Os01g59660 | −1.41 | −0.76 |
No apical meristem protein, putative, expressed | Os01g48130 | 0.31 | −0.02 |
GATA transcription factor 25, putative, expressed | Os02g05510 | −0.53 | −0.09 |
PHD finger protein, putative, expressed | Os02g35600 | 2.08 | 0.74 |
AP2 domain containing protein, expressed | Os02g29550 | 0.42 | 1.23 |
Two-component response regulator, putative, expressed | Os02g55320 | 0.84 | 0.46 |
OsMADS22 - MADS-box family gene with MIKCc type-box, expressed | Os02g52340 | 2.78 | 2.13 |
Histidine kinase, putative, expressed | Os02g50480 | 0.12 | 0.49 |
DIRP family protein, putative, expressed | Os03g43800 | −0.18 | 0.21 |
OsWRKY55 - Superfamily of TFs having WRKY and zinc finger domains, expressed | Os03g20550 | −2.11 | −2.45 |
ZOS3-23 - C2H2 zinc finger protein, expressed | Os03g61640 | −0.64 | 0.3 |
NAC domain-containing protein 67, putative, expressed | Os03g60080 | −4.04 | −4.17 |
MYB family transcription factor, putative, expressed | Os04g49450 | −2.27 | −2.01 |
Auxin response factor, putative, expressed | Os04g57610 | 1.17 | 1.13 |
MYB_Al protein, putative, expressed | Os04g58020 | 0.1 | −0.12 |
Zinc RING finger protein, putative, expressed | Os06g03580 | −2.82 | −2.41 |
bHelix-loop-helix transcription factor, putative, expressed | Os05g46370 | −0.55 | −0.81 |
Transcription factor, putative, expressed | Os05g37170 | −2.58 | −1.44 |
myb-like DNA-binding domain containing protein, expressed | Os06g24070 | 4.09 | 4.63 |
Zinc finger protein, putative, expressed | Os06g33810 | 0.27 | −0.25 |
N-terminal asparagine amidohydrolase, putative, expressed | Os06g41390 | −0.6 | −0.02 |
TIP41, putative, expressed | Os03g55270 | −0.73 | −0.5 |
B3 DNA binding domain containing protein, expressed | Os01g04800 | −3.02 | −2.99 |
ZOS1-03 - C2H2 zinc finger protein, expressed | Os01g04120 | −3.41 | −4.35 |
TCP family transcription factor, putative, expressed | Os01g11550 | 2.09 | 3 |
RNA-binding zinc finger protein, putative, expressed | Os07g48410 | 0.68 | 0.85 |
GRAS family transcription factor domain containing protein, expressed | Os07g38030 | 1.77 | 1.44 |
Response regulator receiver domain containing protein, expressed | Os07g49460 | −1.54 | −0.69 |
Auxin response factor, putative, expressed | Os08g40900 | −0.82 | 0.55 |
Homeobox associated leucine zipper, putative, expressed | Os09g21180 | 1.06 | 0.23 |
No apical meristem protein, putative, expressed | Os10g42130 | −0.03 | −0.19 |
MYB family transcription factor, putative, expressed | Os01g74410 | −4.45 | −3.84 |
bZIP transcription factor domain containing protein, expressed | Os01g55150 | 0.18 | 0.15 |
OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed | Os02g08440 | −5.14 | −2.75 |
Ethylene-responsive transcription factor, putative, expressed | Os02g43790 | −4.02 | −1.47 |
TCP family transcription factor, putative, expressed | Os02g42380 | 4.84 | 4.24 |
RING-H2 finger protein, putative, expressed | Os02g54830 | 0.35 | −0.04 |
Dof zinc finger domain containing protein, putative, expressed | Os02g47810 | 2.99 | 1.97 |
Ethylene-responsive transcription factor, putative, expressed | Os03g09170 | −5.3 | −3.76 |
Homeobox associated leucine zipper, putative, expressed | Os03g08960 | 3.17 | 2.13 |
TCP-domain protein, putative, expressed | Os02g51280 | 0.05 | 0.4 |
Response regulator receiver domain containing protein, expressed | Os03g17570 | −1.86 | −1.42 |
ZOS3-21 - C2H2 zinc finger protein, expressed | Os03g60560 | −5.18 | −6.27 |
MYB family transcription factor, putative, expressed | Os05g04820 | 0.68 | 0.7 |
Actin, putative, expressed | Os05g36290 | −0.97 | 0 |
TCP-domain protein, putative, expressed | Os06g12230 | 0.89 | 0.29 |